RNA id: AMCG00003487


Basic Information

Item Value
RNA id AMCG00003487
length 1493
RNA type mRNA
GC content 0.43
exon number 8
gene id AMCG00003487
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 5463759 ~ 5506907 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGGTGAAGATGTCAGCCGCTGAGGAGGATACGGAGCTGCGGGATCTGTTGGTCCAAAATCTGGAAAATAGCGGCGTCTTGAATAAAATCAAGGCAGAACTGCGAGCGGCTGTGTTTCTTGCTCTAGAAGAACAAGAGAAAATAGAGTTAAATGGACTGGAGAGCCGAGAAGCTGTGGCCAGAGAACTGGGCATTACAGAACCAGAGGGCAACAAGAACACCCCACTGCTGCTGGAGATTGTGAAGAGAGGTCGCCACAAAGAGAAGGGCTCCTCCAGCTCAGCAGAGGAATTATCTCCAAAACAGATTGCTGAAGCCAGGAAAAAGTTTGAACATTACGACAAGGGGATCGAAGAGAGCTATTGTGATACaagcatgaaaaacaaaagtaatatcCAGCTGTCATCCCGAGGGTCAAAGCTCAGTGAGAACAGCAAAGAAGCTCCTCTAGTGAAGAGCGTCAGGGATCTGGATGTGGATGTGGATGtggatgaggaagaggaggaagaaggcGATTCCTTCTTTGATGATCCACTGCCCAAACCTCAAAAAACCTATGGCTGCCTCTCTGCTATAAATAGCGACACTGACGACGATGTGGATGATCCCTTTGCAGACAATGGTAATGGATACAACCCAGGCGGGAGCACAAGTCATCgatcagataaaacaaaaagtgaggTCAGCATTGGAGAAGAGATAGAAGAGGTTTCTATTGAAGGAGTGGATTTCAATGCCAGTGATAAGCTTGAGGACCTAACACAGGACCACAGCATTTCCCAGTTCAGTGAAGCGGCTGACTACATGGAGGAAGTGGCATCAGTGTCCCAAAAGTGACTTTATTCTATCATTAGAGAGAGTTTGTTTACGACCACttcatttttgaaagaaaatacaagataATAAAAGACCATGAAAATGCTGGACCTTGAAAACCCTGTCTGTGCCTTCTGACAGAAAATAGTACATGGCTCCTTGATTGATCTCCTATAACAGTCCATATGTTATGGTCTTTCTACATGTATATACGGATGTTGGTGAGCTGGATCAAATTTCCTTTACTATTTTAACTACttagattttagttttctaGTTACAGTGCCAAGATTAATATGGGATGGTTAACTTCACATTATGGCTTGTGTAGTCTAAGACCGAGCATAAGTATCTGACAGGGGGTCTTCGCAGTTCGTCAAATTGTTGTTCATTGTATTGCAGAGTTGTCACTAATGAATATAGGACGTTTTTTTGTCACCTGTCCTCACAGAGTTGGGGGCGGCTTTTGACGTCGGAGCTACAGAGTCACTCTGTGATCTAAGTATCGGCCCAGGAAGGCCAGtagatatttgaaaataatacaagaaaaaacagcagagagCAAGCTCATGCTtaattttatgaataataatttatctAATTTTACTAAGAGTACAGATTACTTTGAATGCCTTGACTTTACGTCATGTGATTTAATGCTTTGGAGATGGGCTAA

Function

GO: NA

KEGG:

id description
K16546 FGFR10P; FGFR1 oncogene partner

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU992 lncRNA upstream 129007 5332509 ~ 5334752 (+) False AMCG00003480
TU905 lncRNA upstream 910114 4552898 ~ 4553645 (+) True G752
TU893 lncRNA upstream 943126 4515348 ~ 4520633 (+) True AMCG00003469
TU889 lncRNA upstream 979489 4483890 ~ 4484270 (+) True G742
TU878 lncRNA upstream 1008617 4452564 ~ 4455142 (+) True AMCG00003473
TU1087 lncRNA downstream 43838 5550745 ~ 5556306 (+) True G907
TU1088 lncRNA downstream 50700 5557607 ~ 5558515 (+) True G908
TU1140 lncRNA downstream 322552 5829459 ~ 5829745 (+) True G960
TU1170 lncRNA downstream 448697 5955604 ~ 5955820 (+) True G983
TU1177 lncRNA downstream 479131 5986038 ~ 5986394 (+) True G990
AMCG00003485 mRNA upstream 61219 5379028 ~ 5402540 (+) True AMCG00003485
AMCG00003481 mRNA upstream 123912 5335491 ~ 5339847 (+) True AMCG00003481
AMCG00003480 mRNA upstream 129471 5303450 ~ 5334288 (+) True AMCG00003480
AMCG00003478 mRNA upstream 276486 5175015 ~ 5187273 (+) True AMCG00003478
AMCG00003475 mRNA upstream 768422 4689484 ~ 4695337 (+) True AMCG00003475
AMCG00003495 mRNA downstream 245236 5752143 ~ 5753261 (+) True AMCG00003495
AMCG00003498 mRNA downstream 260451 5767358 ~ 5769937 (+) True AMCG00003498
AMCG00003497 mRNA downstream 317674 5824581 ~ 5825732 (+) True AMCG00003497
AMCG00003496 mRNA downstream 407564 5914471 ~ 5915592 (+) True AMCG00003496
AMCG00003500 mRNA downstream 759994 6266901 ~ 6267507 (+) True AMCG00003500
TU1202 other downstream 980785 6487692 ~ 6494905 (+) True G1012
TU1569 other downstream 3142218 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 3748921 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 4270601 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 5983278 11490185 ~ 11491443 (+) False AMCG00003606

Expression Profile