RNA id: AMCG00003491


Basic Information

Item Value
RNA id AMCG00003491
length 1167
RNA type mRNA
GC content 0.54
exon number 10
gene id AMCG00003491
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 5914647 ~ 5969984 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATTACAATTACAGTCTTAAAGGCAGTGTCAAGAAGGCGGCGCTGCAGGAGCCCGCCCAGGCCTCACCAAACAAGGCGCTCATCGCTACAAGGCCGAGAAGGGGCTCGGACGAGCTGCACTTTGTTATGGCTATCAGGGGAGCCCCAATTAATATCCTGCAGGCCAGGAGATTGGAAATCCTGAGATCGCTGGACCAGCTGTTTGATATCACAGCAGAGGACATTGAGGCCATTAACAAGACATATCCTACCATCCAGAAGAGACTTGCTGCCCCTTCTTGTGAAAGCGAGGCGCTCCAGCACCCCCCAACCGAGGAGACTGAGAAGAAGCTGCATGCCGAGAACATTGACCCCGAGGCTCTCAAACCTGGAGACCAGAAGTTCCAGTCCAGAGAAGTGACACGGGAGGCAGTGTCCACCCCTCCTCCTGCCCCTGCTAAAGCCACCCTGAGCGAGGATGGCATGGACAAGAAGTCAAAGGCCATCATTGAGGAGTATCTCCACATCAATGACATGAAGGAAGCCCTGCAGTGTGTCCAGGAGCTGAACTCTGAGCCGCTGCTCTTTGTGTTCGTGCGCAACGGCATCGAGTCTTCATTGGAGCGCAGCACCATTGCACAGGAACGCATGGGCCTGCTGCTCTACCAGCTGCTCAAGGCTGGCACCCTGCCCACTGAGCAGTTGCAGGAAATCCTGGAGGTGGCAGAAGACATGGCCATTGACATCCCTTACATCTGGCAGTACCTGGCAGAGATCATTGCACCCATGCTGCATGAGGGGAGCACTGCCATGGATGAACTCTTCAACATCTACCATGAAGTCAATGTTCACTTGGTCCAAGATGATGGTTTCCCCTTGAGGAGTCACGGAGGTCCTAAGGAGCTTGCCATAAATATTGCTCCCGATGAGAAGAGTCTTCCGCAAATTGGCCACCCGCAGGAGAAGGCACAGCTTGTCTCCCTGCTTGCTGATGACTGCAGTCTGGCTGAAGGAAACAGTCTTGGCTCTTTTCTTGGGCAGGGAGATCTTGGTTACGATGACTGCACACAGGAAGCACTTGATGAGAGCCCCTATGATGGATTGGACAATGAGCAGGAGTACCAGAGCAGTGAGAAGATGAACCAGCTGCCCATGAAAGAGCCAGAAAAGATGAAGAGGACATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1141 lncRNA downstream 84898 5829447 ~ 5829749 (-) True G961
TU1126 lncRNA downstream 126326 5788068 ~ 5788321 (-) True G946
TU1122 lncRNA downstream 159179 5752077 ~ 5755468 (-) True G942
TU1029 lncRNA downstream 572660 5340461 ~ 5341987 (-) True G862
TU1009 lncRNA downstream 579889 5330726 ~ 5334758 (-) True G845
TU1180 lncRNA upstream 16581 5986565 ~ 5986975 (-) True G993
TU1185 lncRNA upstream 317344 6287328 ~ 6287540 (-) True G998
TU1319 lncRNA upstream 848673 6818657 ~ 6825716 (-) True G1114
TU1323 lncRNA upstream 871785 6841769 ~ 6851759 (-) True G1117
TU1359 lncRNA upstream 1103417 7073401 ~ 7073614 (-) True G1147
AMCG00003490 mRNA downstream 63466 5846898 ~ 5851181 (-) True AMCG00003490
AMCG00003489 mRNA downstream 181210 5633462 ~ 5733437 (-) True AMCG00003489
AMCG00003488 mRNA downstream 358905 5553481 ~ 5555742 (-) True AMCG00003488
AMCG00003486 mRNA downstream 500986 5408798 ~ 5413661 (-) True AMCG00003486
AMCG00003483 mRNA downstream 541229 5361087 ~ 5373418 (-) True AMCG00003483
AMCG00003492 mRNA upstream 4961 5974945 ~ 5977627 (-) True AMCG00003492
AMCG00003493 mRNA upstream 18100 5988084 ~ 5997463 (-) True AMCG00003493
AMCG00003494 mRNA upstream 173088 6143072 ~ 6144359 (-) True AMCG00003494
AMCG00003502 mRNA upstream 677468 6647452 ~ 6656335 (-) True AMCG00003502
AMCG00003504 mRNA upstream 726971 6696955 ~ 6700531 (-) True AMCG00003504
TU1027 other downstream 558179 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 1253280 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 2484375 3394657 ~ 3430272 (-) True G531
TU462 other downstream 3475826 2437727 ~ 2438821 (-) False AMCG00003422
TU426 other downstream 3512752 2397642 ~ 2401895 (-) True AMCG00003423
TU2164 other upstream 4981192 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 5133342 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 5953824 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 6106054 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 7064969 13034953 ~ 13035489 (-) True G2236

Expression Profile