RNA id: AMCG00003496


Basic Information

Item Value
RNA id AMCG00003496
length 1122
RNA type mRNA
GC content 0.50
exon number 1
gene id AMCG00003496
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 5914471 ~ 5915592 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATCCAGTACTTCCGGAAACGCATACGTGAACACATGGCAGAACGCCAGATCAGGAGGACCAGACTGGTGGCCAAAGATGGGCACTGCAACATAGAGTTTGGCAATGTGAGGCACCACAAACACTTCGCCTTCCTAATGGACTTCTGGACCACGTTTGTGCAGATTCGTTGGCGCTATGTCCTCTTCATCTTTTCTGGCTCTTTCATGGGCAGCTGGTTCATCTTCTCACTGCTCTGGTACTCTGTTGCGAAGAACAACGGGGACCTCACAGAGCAAAACCCACCTGCTAATCACACCCCTTGCGTGTTCAATGTCCATGGACTCACCTCAGCTTTCCTCTTCTCTGTGGAGACCCAGATGACTATTGGATATGGTTACAGAGCTCCAACAGATATCTGTGGGTCAGCGGTCACCCTGCTCATTGTCCAATCCATCATAGGGGCTCTCATCAAGTGCTTCCTGTGTGCAGTCATCGTAACCAAGATCTCCCTGCCCAAGAAAAGAGCCAAGACTGTTTCCTTCAGCCAGACTGCAGTCATCAGCAAGCAGGGAGACAAGCTGTGCCTTCTCCTGCGGGTGGCCAATTTGCGGAAGACTCTTCTCATCGGGAGCAATATTTATGGCAAGCTCCTTAGGACCTCCGTGACTCCTCAAGGGGAAACCATCATCTTGGACCAAGTGAACATTGACTTCATGGTAGATGCTGGTAGGGACAATCTATTCTTCATTTGTCCTCTGACTCTGTGCCACATCATTGACAAGAACAGTCCCTTCTTCAAGATATCTGTGGACACACTCCACAAGCAGGACTTTGAGCTGGTGGTCTTCTTGGACAGTACGGACGAATCCACCAGCTCCAGCTGCCAAGTACGGACTTCCTTCATCCCGAGGGAAATCCAATGGGGCTACACCTTCCTACCCATCATCTCTCGATCCAAGGAAGGCAAGTACAGGGTGGACTTCTCCAACTTCAACAAGACCAAGCAGGTGACCACTCCACACTGTGCCTACTGCTTCTACAATGAAGATGCACACCTGCcaaaggaaattaaaggaaTTGTCAACCTGGGATTTGTGGCAACTGAAATCAACAACACAGCTGAATTTACAAGCATGTGA

Function

GO: NA

KEGG:

id description
ko05206 MicroRNAs in cancer

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1140 lncRNA upstream 84726 5829459 ~ 5829745 (+) True G960
TU1088 lncRNA upstream 355956 5557607 ~ 5558515 (+) True G908
TU1087 lncRNA upstream 358165 5550745 ~ 5556306 (+) True G907
TU992 lncRNA upstream 579719 5332509 ~ 5334752 (+) False AMCG00003480
TU905 lncRNA upstream 1360826 4552898 ~ 4553645 (+) True G752
TU1170 lncRNA downstream 40012 5955604 ~ 5955820 (+) True G983
TU1177 lncRNA downstream 70446 5986038 ~ 5986394 (+) True G990
TU1358 lncRNA downstream 1157812 7073404 ~ 7073609 (+) True G1146
TU1403 lncRNA downstream 1449352 7364944 ~ 7365477 (+) True G1187
TU1436 lncRNA downstream 1573853 7489445 ~ 7489881 (+) True G1218
AMCG00003497 mRNA upstream 88739 5824581 ~ 5825732 (+) True AMCG00003497
AMCG00003498 mRNA upstream 144534 5767358 ~ 5769937 (+) True AMCG00003498
AMCG00003495 mRNA upstream 161210 5752143 ~ 5753261 (+) True AMCG00003495
AMCG00003487 mRNA upstream 407564 5463759 ~ 5506907 (+) True AMCG00003487
AMCG00003485 mRNA upstream 511931 5379028 ~ 5402540 (+) True AMCG00003485
AMCG00003500 mRNA downstream 351309 6266901 ~ 6267507 (+) True AMCG00003500
AMCG00003499 mRNA downstream 459667 6375259 ~ 6376299 (+) True AMCG00003499
AMCG00003501 mRNA downstream 705219 6620811 ~ 6646702 (+) True AMCG00003501
AMCG00003505 mRNA downstream 807938 6723530 ~ 6736370 (+) True AMCG00003505
AMCG00003506 mRNA downstream 903024 6818616 ~ 6825710 (+) True AMCG00003506
TU1202 other downstream 572100 6487692 ~ 6494905 (+) True G1012
TU1569 other downstream 2733533 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 3340236 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 3861916 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 5574593 11490185 ~ 11491443 (+) False AMCG00003606

Expression Profile