RNA id: AMCG00003498


Basic Information

Item Value
RNA id AMCG00003498
length 1137
RNA type mRNA
GC content 0.49
exon number 2
gene id AMCG00003498
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 5767358 ~ 5769937 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATCCAGTACTTCCAGAAACGCACCCTAAAACACCTGGAAGATAGAAAGATTAGGAGGACCAGACTGGTGTCCAAGGAAGGGCACTGCAACATAGAGTTTGGCAACATGAGGTACCACAAACCCTTGGCCTTCTTAATGGACTTCTGGACCACAGTCGTGGAGATCCGTTGGCGTTATGTcctcttcattttttgtggctCCTTCTTGAGCACCTGGTTCTTCTTCGCACTGCTCTGGTACTCTGTTGCGAAGAACAACGGAGACCTCTATGTGCAAAACCCCCCTGCGAATCACAGCTTTTGCGTGCTCAATGTGCAAGGACTCACCTCTGCTTTCCTCTTTGCTGTGGAGACCCAGATGACCACTGGATATGGTTACAGAGTTCCAATGGATGTTTGTTGGACAGCGGTCACCCTTCTTTCTTTCCAGTCTTCTGTGGCACCTCTTATCATGACATGCCTTTGTGGAGTTATCCTGGCCAAGATTTCCATGCCCAAGAAAAGAGCCAAGACCGTCTCCTTCAGCCAGACTGCAGTCATCAGCAAGCAGGGAGACAACCTGTGCCTTCTCCTCCGGGTGGCCAACCTGAGGAAGAGTCTTCTCATTGGAAAACAGATTTATGGCAAGCTCCTTAGGACCTCCGTGACTCCTGAAGGGGAAACTGTCATCTTGGATCAAGTGAACATTGACTTCATGGTAGATGCTGGTAAAGACAATCTATTCTTCATTTGTCCTCTGACTCTGTGCCACATCATTGACAAAAGCAGTCCCTTCTTTGAGATGTCTGTGGACACGCTCCACAAGCAGGACTTCGAGCTGGTGGTTTTCTTGGACAGTACAACTGAATCCACCAGCTCCAGCTGCCAAGTACGGACTTCCTTCCTCCCAAGGGAGATCCAATGGGGCTATACCTTCCTCCCCATCATCTCTCGATCCAAGGAAGGCAAGTACAAGGTGGATTTCTCCAACTTCAACAAGACCAAGCAGGTGACCACTCCACACTGCACCTACTGCTTCTACAATGAGGATGCACACCTGCCAGTGGAATTCAAAGGAAGGAAATCTAGTCTGTACAAGCAAGGTAATGGGACGAACCACTTTTATCTCTACCTGCTTAGGGAAAGCTGTGACTAG

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005242 inward rectifier potassium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1088 lncRNA upstream 208843 5557607 ~ 5558515 (+) True G908
TU1087 lncRNA upstream 211052 5550745 ~ 5556306 (+) True G907
TU992 lncRNA upstream 432606 5332509 ~ 5334752 (+) False AMCG00003480
TU905 lncRNA upstream 1213713 4552898 ~ 4553645 (+) True G752
TU893 lncRNA upstream 1246725 4515348 ~ 4520633 (+) True AMCG00003469
TU1140 lncRNA downstream 59522 5829459 ~ 5829745 (+) True G960
TU1170 lncRNA downstream 185667 5955604 ~ 5955820 (+) True G983
TU1177 lncRNA downstream 216101 5986038 ~ 5986394 (+) True G990
TU1358 lncRNA downstream 1303467 7073404 ~ 7073609 (+) True G1146
TU1403 lncRNA downstream 1595007 7364944 ~ 7365477 (+) True G1187
AMCG00003495 mRNA upstream 14097 5752143 ~ 5753261 (+) True AMCG00003495
AMCG00003487 mRNA upstream 260451 5463759 ~ 5506907 (+) True AMCG00003487
AMCG00003485 mRNA upstream 364818 5379028 ~ 5402540 (+) True AMCG00003485
AMCG00003481 mRNA upstream 427511 5335491 ~ 5339847 (+) True AMCG00003481
AMCG00003480 mRNA upstream 433070 5303450 ~ 5334288 (+) True AMCG00003480
AMCG00003497 mRNA downstream 54644 5824581 ~ 5825732 (+) True AMCG00003497
AMCG00003496 mRNA downstream 144534 5914471 ~ 5915592 (+) True AMCG00003496
AMCG00003500 mRNA downstream 496964 6266901 ~ 6267507 (+) True AMCG00003500
AMCG00003499 mRNA downstream 605322 6375259 ~ 6376299 (+) True AMCG00003499
AMCG00003501 mRNA downstream 850874 6620811 ~ 6646702 (+) True AMCG00003501
TU1202 other downstream 717755 6487692 ~ 6494905 (+) True G1012
TU1569 other downstream 2879188 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 3485891 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 4007571 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 5720248 11490185 ~ 11491443 (+) False AMCG00003606

Expression Profile