RNA id: AMCG00003510


Basic Information

Item Value
RNA id AMCG00003510
length 3506
RNA type mRNA
GC content 0.38
exon number 2
gene id AMCG00003510
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 7023085 ~ 7035616 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaccagcagggtagggggtcccccaggaccggtttgggaaccactggtctatGTGATAAGGTACAGTTTCTGGCTCACAAAATGCGAACATGAAATACCTTTATGCTCTATCTTCTAGtaataattttgtaaatgaGGCTCCCTGCTAACACCCAGTTGCCACTGGGCTAAAACAATCCTAGGGGAAAACGACACTGTGTGTAAATGAATGCATAGATAATGATTATAATTGGTATTTTGAACTACACTTcgttttataaaacaaaatacctaaAGGCTCGCCATAAATAGACATTGATAAACTTGTTTACATACACAAGACAAGTAAATCTGCATTCCTTTGAAGTCTGCGCACTTGCTGCGCGCCACTGTGCGAAGGTCGGCTTGCTGTCCACTGCTGCGCCGTGCTTTCAGCCCACGGGCAGAGACCTTCCCTGGGCTCTGAGGAacatacatcaaaacaaatatgaaacaaaactcATGTCGAGAGGACAAAGCGAAAATAATGGACAATATCGAGGAGCCACCTGATGAAACTCGGCACCACAAAAGAGCGACGCAAAGCAGGCAGCGGCCGAACCGCGCAGAAGAGAAGgtgcagcggcagcagcagcgcgACTCGGCCAGCGGACACACGGGCAATGCCAGGCCGGTCCACTTTGCATTGCTCCCCGGTCCGTACGAGCCCCTGGTAGAAGAGGACGATGCGAAAACCACATCTAAGCAGGAAAGGAAAGCGAAGAACAAGAAGAAGTACAAGAAATACAGGAAGAATGTGGGCAAAGCTCTGCGTTTTGGCTGGCGGTGTCTGGTGATTGGGCTTCAAGGCTTCGCAGCTGGCTACACCTCACCTTTGACAGCGGCTACCACTCTGGTCCCAGACCTTCATGGAACAAGGGCTTAGTCTGATTGAGACGATTTCCAGACAGGATTTTGCCTCCCAGGGAACAAACTTTGTTATTCCCACTTGCCTATGTGACCTTCTGATAAGAAGTCACTTGAGACAGAAGGGGTAACTTGCACTGGAGTTCAAATTAAAGCCAATAACAAAGTAGATCTTCACTTTCAGCTTGCATTCAGTATTTAATTGCTTAACTTCAGGGAttagatacattttattatagaaGACCTGCATGTCTTTGCCTATATGGCTCTATTCATAATATCATACATAAAGgtgatatttttaaaggaagtgGAATTTTGTGGAAAAGCAATTTAGGTATAAATGCATGCTagggaaaaaaggaacaaatatGAGAGTGCAATGTATCCcctaattatgtttaatttttttcttaaagtatCTGAAATGTTCCTTTTATTACAGCAGTCTTCATAACATTGTAACATTCCGATTGATAGTTATCTTTTAACATACATTGTaaacaattttgcaaagacaAATCATAAACTATTCCCCTATCGaggcatgcacacacattttatacCACTACCTAGCCATGTTTTGGCTGCAGTTTTTATTGTGATGTTATCGTGATACATGTCTTTGTAAAGGGTACTGTTGGGGTACACTACTAATCAATATAATTTGAGGGAGCAAATATTTTCATTCAACTGAGCTTTTAATGACCTATTGTCCTCAATAATTTCCTCAAATGGACCAATGAACACCCCCTGTACAGGTgttcatgaattaatttaaagagtTCTATAATAATTATGTGAATGTGAAATCCTGTAAAAGTCtgtattcacattttattttcaacaaactGAGTGTTAGACCTGTGCCTTACCAGAAGTGCAAACAAGTGTTCATTGAAAATACCAGGCATTCTGAAAAATGGGACGTGAGAACTGAATAATCAACCTGGGTGTTCCAGAGGTATTCAGCATATCTCAGAATAATACTGAGAAGCACAGAAGGAAAAAGCAAGTGAGAAAAGGCAAAGAGGCTTGTGAATGAAGGTGACAAGTCAGATCATAATGAAGGTGGTGATAATGAGGCAAGATGAAAGCTAGGGGATGGAATGTATTGTGGATTAAAGAAGGAAAGTAAACAGGAAAGACTCAGCAGGgaataaagaaagcaaaaaaaacacgAAACAGTTAAAGAATGGCCTAGCTTTCAGAACATGATACAAAGGCATTTCAGAGACTCCCACTTGCTAACAGcaagactaaaacaaaaacagcgtctgtaatgcaaagtgttataAATCTGTTCCTGCAGCACTTAAAGGAGAAGTTCAGTACATGGGCATTTAGCTGTGCAATAATTAGATTAACGGAGCAGAGATATATGCAGAATGAACATTATCAAGGGGATGTTAATAATTACTAATGATTACTCTGAAGAATTCAGAGGCGCACTCCCCTGAGGCTCTGATAAAAATGAATCATTTCATACAACAACATATTTCATAAACAGGTTAAAGTGATGAGCTGGTCACAATACAGccctggaaaaattaagagaccacttaacattaatttctgaacttggatTGGTCTGACAGAGGCAGCTGGGGGGCCACTCCTTGGGTCTCTGATGGACTGCTTGATATATAATGAGTAAcactattttaaacattagctattattattatgttctaaATTTTATTCACAGATACATGATCAGTATTAATGAacataattagattttttattctgttcattCAAATCTGaattgcacattattattatattattattgtgttctttttaaaaattgattgaaatGTAGCTGATGAGTTCTTGTgtaaaattattgttatttatcatACAAGACAGTATTTTATGGAttccaataaaataatttatactgCTCTGTGACTGCTTTCTCTGgtgtgtataaatgtacaaGTATGTTGCTGTGAATGTTCCATTACATTAATAAAGGGTTTCAGTgggtacattaaaaaaaaaatgataatgatcATTGATAATTGTTCCCCAAGGATTTCCGGACAAGACTCCCAGGGAACAAACTGCATTATTCCTACTTGCCTACATGACCTTCTGACAAGAAGTCACTAGAGACAGAAGGGGTAACTTGCATTGGAGTTCAAATAACAAAGTAAATCACTTTCAGCAtgcattcagtattttattgctTAACTTCAGGGATTAGAGAAActttattaaagaaattaagacCTGCATGTCTTTCCCTATATGACtctatatattttcttgctaaactatttcttaattattcccttattaaaatatgcatgatcaatatttattgatttattgaattcCTGCTTGACCTGACAGACAATACAATGTCTCTACTctgagcattttaaattatatgattTGTTTGCAGATATGTAATGGTTTCCACACTCTGTAGTATTTTCAAACATTATCAAacagtacattattttcaaaatcaggtaattaaacagaaatgaatgCAATCGTACTCATTCAACAGCAGTTTCTTTATATTAACTTGCATGTACTGTGAAAATGCATCtcaaagtttttagttttttttttcactttaaaaagtgTCAGACATTGCAATTTGG

Function

GO: NA

KEGG:

id description
ko02010 ABC transporters
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1323 lncRNA downstream 171326 6841769 ~ 6851759 (-) True G1117
TU1319 lncRNA downstream 197369 6818657 ~ 6825716 (-) True G1114
TU1185 lncRNA downstream 735545 6287328 ~ 6287540 (-) True G998
TU1180 lncRNA downstream 1036110 5986565 ~ 5986975 (-) True G993
TU1169 lncRNA downstream 1067766 5955104 ~ 5955319 (-) True G982
TU1359 lncRNA upstream 37785 7073401 ~ 7073614 (-) True G1147
TU1412 lncRNA upstream 329351 7364967 ~ 7365277 (-) True G1196
TU1461 lncRNA upstream 455665 7491281 ~ 7491480 (-) True G1238
TU1448 lncRNA upstream 463817 7499433 ~ 7504188 (-) True G1228
TU1449 lncRNA upstream 463817 7499433 ~ 7504188 (-) False G1228
AMCG00003511 mRNA downstream 500 7016952 ~ 7022585 (-) True AMCG00003511
AMCG00003512 mRNA downstream 91979 6930769 ~ 6931106 (-) True AMCG00003512
AMCG00003509 mRNA downstream 152010 6827926 ~ 6871075 (-) True AMCG00003509
AMCG00003508 mRNA downstream 218195 6803200 ~ 6804890 (-) True AMCG00003508
AMCG00003503 mRNA downstream 295483 6704816 ~ 6727602 (-) True AMCG00003503
AMCG00003514 mRNA upstream 18177 7053793 ~ 7057307 (-) True AMCG00003514
AMCG00003515 mRNA upstream 51024 7086640 ~ 7135114 (-) True AMCG00003515
AMCG00003517 mRNA upstream 132211 7167827 ~ 7208968 (-) True AMCG00003517
AMCG00003518 mRNA upstream 185872 7221488 ~ 7227518 (-) True AMCG00003518
AMCG00003520 mRNA upstream 345482 7381098 ~ 7407614 (-) True AMCG00003520
TU1027 other downstream 1666617 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 2361718 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 3592813 3394657 ~ 3430272 (-) True G531
TU462 other downstream 4584264 2437727 ~ 2438821 (-) False AMCG00003422
TU426 other downstream 4621190 2397642 ~ 2401895 (-) True AMCG00003423
TU2164 other upstream 3915560 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 4067710 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 4888192 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 5040422 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 5999337 13034953 ~ 13035489 (-) True G2236

Expression Profile