RNA id: AMCG00003526


Basic Information

Item Value
RNA id AMCG00003526
length 690
RNA type mRNA
GC content 0.51
exon number 5
gene id AMCG00003526
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 7532553 ~ 7547554 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCAGGCGTCACAGGTAGGGCGTCCGTCCCTCAGCCTCCACCGACCAAAACGGTCGTGATGTACCGCAACGGGGACGCTTTTTTCCCCGGGAGGAAGTTTGTGATCAACCAGCGACAGATGTCGACTTTTGACACATTTCTGAGCTCGGTGACCCAGCGAGTGGAGGCCCCCTTTGGCGCCGTGCGGAGCGTGTACACGCCGCGGGATGGGCACAGGGTGCGGGCCCTGGAGCAGCTGCGGCATGGCGAGGGATACGTGGCGGCAGGGGCGGAGCGCTTCAAGAAGCTGGAttacctTCAGATAACAGCCAAGAAACCCCAACCAAAGAAGAATGAGCAGGTAAGAGCTCGGATACTAATACCAAAATATACTCTAAGAAACTGGGATCGTGTGCTGGCCATGATAACAGAGAAGGTACACCTTCGCACAGGGGCAGTACACAGACTATGCACATTAGATGGGACCTCATTACTTGGTTCAATTGAGTTGGAAAATAACCAGTACTATGTTGCTGTGGGAGCTGAGAAATTTAAAGTCTTGCCATATTTTCAATGGGTGCCCTATAAAGGATCAATGAATGACACGGAGGGAAGTGTATTCAAAGCTAAAGACAAAAGGAAGGAAACTCAAGGAGCCACTGAAGTACAAGAAGACAGGCTTATGAAGGTGGACTTGCCTATTGATCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1468 lncRNA upstream 4095 7526859 ~ 7528458 (+) True G1242
TU1445 lncRNA upstream 34209 7498067 ~ 7498344 (+) False AMCG00003524
TU1436 lncRNA upstream 42672 7489445 ~ 7489881 (+) True G1218
TU1403 lncRNA upstream 167076 7364944 ~ 7365477 (+) True G1187
TU1358 lncRNA upstream 458944 7073404 ~ 7073609 (+) True G1146
TU1479 lncRNA downstream 248897 7796451 ~ 7796854 (+) True G1253
TU1499 lncRNA downstream 728208 8275762 ~ 8276983 (+) True G1271
TU1519 lncRNA downstream 792712 8340266 ~ 8340592 (+) True G1291
TU1531 lncRNA downstream 896186 8443740 ~ 8444024 (+) True G1303
TU1573 lncRNA downstream 1113478 8661032 ~ 8666927 (+) True G1343
AMCG00003525 mRNA upstream 1428 7518051 ~ 7531125 (+) True AMCG00003525
AMCG00003521 mRNA upstream 18143 7505463 ~ 7514410 (+) True AMCG00003521
AMCG00003524 mRNA upstream 28538 7498040 ~ 7504015 (+) True AMCG00003524
AMCG00003527 mRNA upstream 50347 7466921 ~ 7482206 (+) True AMCG00003527
AMCG00003529 mRNA upstream 73077 7453411 ~ 7459476 (+) True AMCG00003529
AMCG00003530 mRNA downstream 431221 7978775 ~ 7980197 (+) True AMCG00003530
AMCG00003532 mRNA downstream 737273 8284827 ~ 8292218 (+) True AMCG00003532
AMCG00003533 mRNA downstream 769484 8317038 ~ 8337650 (+) True AMCG00003533
AMCG00003534 mRNA downstream 1101603 8649157 ~ 8652470 (+) False AMCG00003534
AMCG00003535 mRNA downstream 1271858 8819412 ~ 8842419 (+) True AMCG00003535
TU1202 other upstream 1037648 6487692 ~ 6494905 (+) True G1012
TU1569 other downstream 1101571 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 1708274 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 2229954 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 3942631 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 4026177 11573731 ~ 11577329 (+) True G1989

Expression Profile