RNA id: AMCG00003532


Basic Information

Item Value
RNA id AMCG00003532
length 1422
RNA type mRNA
GC content 0.45
exon number 6
gene id AMCG00003532
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 8284827 ~ 8292218 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACATCGGCCCGTGCCAGGCAAACACCAGATACAAggactgcagcagcagcagagggagGAAACATGTTTGCCACTGACATCTTTCTCATCCTGCACCTGTGCGTGAGCAATGCGTGCTGCGTGTTGTGCAGCGTGGGCAGCGCCTGCTGGAGCTGGGTCGGGCTGAGCATCGAGGAGGGAGACCCGGCCAGAGTCTCCTGCAAGCCCGCAGGGAGGAGCAGCCGTCCAGGCGCCAGAGACCAGAGGCAAGAAGCCCCAGATGCACCGGTCCCCACCAGTGTCAACTACCATTTCACACGGCAGTGCAATTACAAATGCGGGTTTTGTTTCCACACTGCAAAAACCTCCTTTGTCCTGCCTATAGAAGAAGCCCAGCGGGGGCTGCGGCTGCTTAAGCGAATGGAAAAAATCAACTTTTCTGGAGGGGAGCCCTTCTTACACGAGCGTGGTGACTTTTTGGGAAAACTGGTTCAATTCTGCAAACAAGATTTGGAGTTGCAAAGTGATTATCTAGACATTTTAGCGGTTTCCTGTGATAGTTTCAATGAGGAGACCAACAGCATGATAGGCCGACGACAGGGGAAGAAAAGCCACTTGGAAAACCTATACAAAGTACAGAACTGGTGCAGAGAGTACAAAGTGGCTTTCAAAATCAATTCGGTCATCAATACTTTCAACGTGGACGAGGATATGGGGGACCGCATCAGAGAGCTCAGTCCAGTGCGCTGGAAGGTATTTCAGTGCCTGGTTATTGATGGGGAGAATGCAGGTGAAGACGCCCTGAGAGAAGCAGAAAGATTTGTCATCACTGACCAGGAATTTCAGAGCTTCCTGGAGCGACACCGTGACGTGAAGTGCTTGGTGCCCGAATCAAATGAAAAGATGAGAGATTCGTACCTCATTCTGGATGAATATatgCGTTTTCTGGATTGCAGAGAGGGCAGAAAAGACCCATCTAAATCCATCCTTGATGTAGGTGTTGAGAATGCCATTACATTCAGTGGCTTTGATGAGAAGATGTTTTTAAAGAGAGGTGGAAAGTACATTTGGAGTAAAGCAGATATGCAACTAGAGTGGTGATTAAAGCACCAACTACTTTGGCCTGCCTCCGGTGCACTAGAACACATTTAAGTTGATGCAGAAAATTGATGGGTATTATTTTGATTGGCATAGCCaatcagtaaaaacaaagttgggaaattgttttgttgttgttgttgttttttttaaattaatgtaaataggCAAGAATGGGCTCTGATATAGGAATTGCCTGATAtggattaaattatattaatctaatttatgactttacaaaaaaaaagaaacatttgtattattttcatataaagtatatgttatatatgttgttttgtcATACATGTTGTAAAATCCTGTTGTtgatacattataaataat

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0051607 defense response to virus biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005811 lipid droplet cellular_component
GO:0046872 metal ion binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K15045 RSAD2; radical S-adenosyl methionine domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1499 lncRNA upstream 7844 8275762 ~ 8276983 (+) True G1271
TU1479 lncRNA upstream 487973 7796451 ~ 7796854 (+) True G1253
TU1466 lncRNA upstream 534362 7523861 ~ 7750465 (+) True G1241
TU1468 lncRNA upstream 756369 7526859 ~ 7528458 (+) True G1242
TU1445 lncRNA upstream 786483 7498067 ~ 7498344 (+) False AMCG00003524
TU1519 lncRNA downstream 48048 8340266 ~ 8340592 (+) True G1291
TU1531 lncRNA downstream 151522 8443740 ~ 8444024 (+) True G1303
TU1573 lncRNA downstream 368814 8661032 ~ 8666927 (+) True G1343
TU1577 lncRNA downstream 407248 8699466 ~ 8700554 (+) True G1347
TU1613 lncRNA downstream 551609 8843827 ~ 8844082 (+) True G1375
AMCG00003530 mRNA upstream 304630 7978775 ~ 7980197 (+) True AMCG00003530
AMCG00003526 mRNA upstream 737273 7532553 ~ 7547554 (+) True AMCG00003526
AMCG00003525 mRNA upstream 753702 7518051 ~ 7531125 (+) True AMCG00003525
AMCG00003521 mRNA upstream 770417 7505463 ~ 7514410 (+) True AMCG00003521
AMCG00003524 mRNA upstream 780812 7498040 ~ 7504015 (+) True AMCG00003524
AMCG00003533 mRNA downstream 24820 8317038 ~ 8337650 (+) True AMCG00003533
AMCG00003534 mRNA downstream 356939 8649157 ~ 8652470 (+) False AMCG00003534
AMCG00003535 mRNA downstream 527194 8819412 ~ 8842419 (+) True AMCG00003535
AMCG00003541 mRNA downstream 608238 8900456 ~ 8941678 (+) True AMCG00003541
AMCG00003542 mRNA downstream 665923 8958141 ~ 8959534 (+) True AMCG00003542
TU1202 other upstream 1789922 6487692 ~ 6494905 (+) True G1012
TU1569 other downstream 356907 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 963610 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 1485290 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 3197967 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 3281513 11573731 ~ 11577329 (+) True G1989

Expression Profile