RNA id: TU1625


Basic Information

Item Value
RNA id TU1625
length 411
lncRNA type sense_over
GC content 0.40
exon number 3
gene id AMCG00003541
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 8900456 ~ 8941751 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAGTGGCAATCTGGATAAGCAGACCACGAAAGGCAGCACTGCCCTGCACTACTGCTGCCTAACGGACAACGTGGAGTGCCTCAAACTGCTGCTGAGAGGGAAGGCGTCCATTGACATTGCCAACGAATCGGGAGAGACCCCTCTTGACATCGCCAAAAGACTAAAGCACACGCAGTGTGAGGAGCTGCTCAGTCAGGCGTTGTCTGGGAAGTTCAACGCTCACGTCCACGTGGAATATGAGTGGAGGTTACACCACGAGGATCTGGATGAGAGCGACGAAGACATGGAGGAGAAGGTGAGTGTGTCCCACTGTGCTTGTGTCACTCAGGAAAAGTGAGTTAAGCTGGTCCTCAAGGCCAGACCCcgattatttcaattattttgtcttcCTTTGGGGATCCAAAGACCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1613 lncRNA upstream 96069 8843827 ~ 8844082 (+) True G1375
TU1577 lncRNA upstream 239597 8699466 ~ 8700554 (+) True G1347
TU1573 lncRNA upstream 273224 8661032 ~ 8666927 (+) True G1343
TU1531 lncRNA upstream 496127 8443740 ~ 8444024 (+) True G1303
TU1519 lncRNA upstream 599559 8340266 ~ 8340592 (+) True G1291
TU1675 lncRNA downstream 67546 9009297 ~ 9022573 (+) True G1430
TU1676 lncRNA downstream 67546 9009297 ~ 9027632 (+) False G1430
TU1677 lncRNA downstream 67546 9009297 ~ 9020218 (+) False G1430
TU1701 lncRNA downstream 158867 9100618 ~ 9106764 (+) False AMCG00003544
TU1863 lncRNA downstream 758806 9700557 ~ 9703478 (+) True G1574
AMCG00003535 mRNA upstream 97732 8819412 ~ 8842419 (+) True AMCG00003535
AMCG00003534 mRNA upstream 287681 8649157 ~ 8652470 (+) False AMCG00003534
AMCG00003533 mRNA upstream 602501 8317038 ~ 8337650 (+) True AMCG00003533
AMCG00003532 mRNA upstream 647933 8284827 ~ 8292218 (+) True AMCG00003532
AMCG00003530 mRNA upstream 959954 7978775 ~ 7980197 (+) True AMCG00003530
AMCG00003542 mRNA downstream 16390 8958141 ~ 8959534 (+) True AMCG00003542
AMCG00003539 mRNA downstream 23960 8965711 ~ 8977843 (+) True AMCG00003539
AMCG00003540 mRNA downstream 37849 8979600 ~ 8982021 (+) True AMCG00003540
AMCG00003544 mRNA downstream 134139 9075890 ~ 9106765 (+) True AMCG00003544
AMCG00003545 mRNA downstream 168090 9109841 ~ 9131160 (+) True AMCG00003545
TU1569 other upstream 287747 8649125 ~ 8652404 (+) True AMCG00003534
TU1202 other upstream 2445246 6487692 ~ 6494905 (+) True G1012
TU1763 other downstream 314077 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 835757 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 2548434 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 2631980 11573731 ~ 11577329 (+) True G1989
TU2685 other downstream 4095686 13037437 ~ 13042597 (+) True AMCG00003648

Expression Profile