RNA id: AMCG00003549


Basic Information

Item Value
RNA id AMCG00003549
length 2807
RNA type mRNA
GC content 0.53
exon number 19
gene id AMCG00003549
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 8987105 ~ 9005791 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCAATAGTACTTCCGGGTGTGGGCGTCTGCGTCTGGGAGCGGagtaacagtttgttttttagtttgaaCACTATTCAATATTATCGCAGTTATGGCACTTCACAGCCAATTATTGTGATTAGGGTTTATTCAGTCCAATTTCGACAGCCATCCGGTTTAAGTTTCGTAGCGCTTCTGTCAGGCCTTTCGGATGCGGAAGGGACTTCATCAACTCAGTCGCTATGTTGACATCAAGCAGAAGGAAAGCAGGAGCTAATGGCACAGGGGGGCAGTTTCGGGTCATGTCTGTCCTAGCCCAGACCAGGGTGTTTTTAACTTCCTTGGTGCTTTTAGTTTCTCTCAGTTGGGTGGATGGTGGCAGGAAGCCTTTAGTGGGAAAACTGGAAAATGACCTGGAGTTGGAATCCCTCAACGCAGTGCTGGAAGACTATGATGTCTTGTCTCTCTCAAGTCTCCGGCACCACTCTGTGAGGAAGAGGGAGGTGAGCTCTGAATCCCAAGTGGAGCGGCTTCTGAGCTTCTCGGCCCTTAGGAGAAATTTCAACCTGTACCTGACTACAAATACTGACCTCTTTGCTGAAAACTTCAAAGCTGTGGTCCTCGATAAGAATGGGGTAGAAGATGTTTACGAAGTTCAAAAGAAAAACTTCTATACTGGACATGTAGTAGgGGAGGAAAACTCTCGGGTGCGAGCCCATATTGATGATGGGGACTTCCTGGCCCACATTCAGACCCATGATGGAGAATACAACATTGAGCCTTTGTGGAGGTTCACGCAGTCACAGCGCGACGACCGGCTCTTGGCCTACAGGTCGGAGGACATTAAAGACATCAGCCGCATTAATTCTCCAAGCGTCTGTGGATACATCAACGCAGTCGAGCAGGACCTGCTGCCCGAGGAGGCCAGGAGAGCCAAGACAGAAGAAGAAATAGTAAAAGAGCCCCTCCATCgagaaaaaaggcagaaaagtGCCCAGAACTCCCAGAAAAACACCTGTCCGCTGCTGGTGATTGAGCTGATTGATCGAGTGGACGACATGTACAGGAACACAAGCTGGGATGAGCCTGGCCTTGATGGGATCGGGGTACAGATCTTGCAGataCACATCAACAAAGAGCCAACTCCTACTAAAAGCCAACATTACAATATGAAGGGCAGCCCCACACCGGGGAGGGATGTCTGGGATGTGAAGAAGCTGCTGGAGCAATTTAGTTCAGATATAGCACCCAATGCCTCAACTGCCTGCCTGGCACACCTGTTCACCTACCAAGACTTCGACCAGGGAACGCTGGGACTGGCGTATGTCGGCTCTTCTAGGAAAAATGCTCTCGGGGGCCTCTGTCCTAGAAagtATCTTCCTACACCTTCAGCTAAACCCATTTACCTGAACACTGGTTTAACCAGCACCAAGAACTATGGGAAAACCATTTTAACCAAGGAAGCAGATCTGGTAACCACTCATGAGTTGGGCCACAACTTTGGAGCTGAACATGACCCAGACAACGTGCCCAACTGCGCACCTAACGATGACAACGGGGGGAAGTTCGTCATGTTCCCCATAGCTGTCAGTGGAGATCATGATAACAACAAGAGGTTTTCCAGTTGCAGTAAAACCTCCATCATGAGGACGCTGACTACAAGATTGGACGAATGCTTTAAGCCGAGGAACAGCAAGGTGTGTGGCAACTCTCGAGTGGAGGAGGGCGAGGAATGCGACCCTGGGCTGCTGCATCTGCACGACGACCTCTGCTGCACCTCCGACTGCAAGTTCAAACCCCATGCCCAGTGCAGTGACAGAAACAGTCCCTGTTGCAAACGGTGCAAGTTCGAAAGTTCTGGGAAGGTCTGCCAAGAAGCCATCGGTGCCACTTGCAAGGGGCAATCAACATGCACAGGCAACAGCAGCGATTGCCCCCCCCCGACCAACGCCCCTGATGGAGACACCTGTGTGGACATGGGCCGCTGCCGCAGCGGAGAGTGCGTGCCGTTCTGCGAGGTCGTCAACCTCCGCCCCTGCGCCTGCAACGAGACCGATAACTCCTGCAAAGTGTGTTGTAGGGACCCTTCAGGAGTGTGCCAGCCCTACAAGGACGATAAAGGAAGCTTCCTGTTCCTGCGCAAAGGCAAACCCTGCACTGTGGGCTTCTGTGTGGAGAACGGAAAGTGTATGAAACAGGTTCAAGACGTCATCGAGAGACTCTGGGATTTTATTGACAAACTGGACATCAATACGTTTGGGAAGTTCCTGGCAGATAACATTGTGGGCTCGGTTGTGGTCTTCTCTCTGCTCTTCTGGATCCCCCTCAGCATCCTGGTCCACTGTGTGGACAAAAGACTTGACCAGCaatatgaagaaaacaacaagtcTCTCTTTCACCCCAGCAATGCGGAGATGCTAAGCAGCTTGGAGTCGGCCTCAGTGCGCATCGTTaagcccccaccccctctgcTGACCAATCGCTTCCAGCCCTCGCATCCGCCCGCCCCCAGCATGGCGACACCCCCCACCGGCTCCAGCACAGGCCCCAAGTTGGAGGCACCCCGCATGGCCACTATCGAAGAAGACCCCAGCAGCGACTCCCACCTGGATGAGGCACTTGGGGAGGACTTTGCCAACAGTGGAACGCCCGCTAAATCCTTCGAGGACCTGACCGAACAGTCGACCACTCGCAGCGACAAAGCTCTGGCCTTCCGCCTGCAGAGACAGGCGCGCATCGACAGCAAGGAGACGGAGTGCTAGCTGCCTAAATCCAGCCCCCCAACTACTCAGGAGAGCAGGGAGtaaggcagagagggagggaggg

Function

GO: NA

KEGG:

id description
K06059 ADAM17, TACE, CD156b; disintegrin and metalloproteinase domain-containing protein 17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1656 lncRNA downstream 9256 8974810 ~ 8977849 (-) True G1415
TU1646 lncRNA downstream 22610 8957527 ~ 8964495 (-) True G1405
TU1619 lncRNA downstream 134664 8852197 ~ 8852441 (-) True G1381
TU1612 lncRNA downstream 145350 8841478 ~ 8841755 (-) True G1374
TU1595 lncRNA downstream 317274 8650023 ~ 8669831 (-) True G1363
TU1698 lncRNA upstream 55697 9061488 ~ 9075883 (-) False AMCG00003550
TU1750 lncRNA upstream 169064 9174855 ~ 9179981 (-) True G1492
TU1751 lncRNA upstream 169064 9174855 ~ 9179981 (-) False G1492
TU1926 lncRNA upstream 844900 9850691 ~ 9851427 (-) True G1630
TU1927 lncRNA upstream 846278 9852069 ~ 9852338 (-) True G1631
AMCG00003537 mRNA downstream 235902 8721244 ~ 8751203 (-) True AMCG00003537
AMCG00003538 mRNA downstream 280796 8686046 ~ 8706309 (-) True AMCG00003538
AMCG00003536 mRNA downstream 314229 8653758 ~ 8672876 (-) True AMCG00003536
AMCG00003531 mRNA downstream 703361 8278896 ~ 8283744 (-) True AMCG00003531
AMCG00003528 mRNA downstream 1489013 7489697 ~ 7498092 (-) True AMCG00003528
AMCG00003550 mRNA upstream 3326 9009117 ~ 9082850 (-) True AMCG00003550
AMCG00003548 mRNA upstream 146093 9151884 ~ 9155291 (-) True AMCG00003548
AMCG00003553 mRNA upstream 176310 9182101 ~ 9207165 (-) True AMCG00003553
AMCG00003552 mRNA upstream 248063 9253854 ~ 9254096 (-) True AMCG00003552
AMCG00003554 mRNA upstream 262712 9268503 ~ 9312491 (-) True AMCG00003554
TU1027 other downstream 3630637 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 4325738 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 5556833 3394657 ~ 3430272 (-) True G531
TU462 other downstream 6548284 2437727 ~ 2438821 (-) False AMCG00003422
TU426 other downstream 6585210 2397642 ~ 2401895 (-) True AMCG00003423
TU2164 other upstream 1945385 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 2097535 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 2918017 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 3070247 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 4029162 13034953 ~ 13035489 (-) True G2236

Expression Profile