RNA id: TU1698


Basic Information

Item Value
RNA id TU1698
length 464
lncRNA type sense_over
GC content 0.52
exon number 5
gene id AMCG00003550
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9009117 ~ 9082850 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATGTCTGCATCCACACACTAGCGCAGgagacaCATTCTTTTGTCTCAAGGGCTGCATCTTTCCAAAGGTTGTCTGTACCATACAGCCTGCTGGAGTGATCATGTAAGGGAATGCTGATGAGAAGCTGCCACAGAAGCAATTGATGAAAGATGTCACAACGACGCGAAACAAAGACCGCGACGACAACACCACACATACTGTTATAGTGTGGCTTTTTGAAATGGCATGTGACCACATCTCAGCAGATGACATTATGGCTATACAGGTTAAAAGCCCTCCTTTGTTTCTCATGACAAGGCATGTTGCAGGCAGTTCTGAGTACAGAAATCATGCGGCAGGGTTTGAAGACAGCCTTGCCCAGAACATTACTACAGAGGGTAACGAGGGATAGCACGCAAGATCGCCGTGGTCAGGATTCCACTGCTGTGCTGGAACAGGAAGCTGTCCTCTGGCTGATGGAGac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1656 lncRNA downstream 83639 8974810 ~ 8977849 (-) True G1415
TU1646 lncRNA downstream 96993 8957527 ~ 8964495 (-) True G1405
TU1619 lncRNA downstream 209047 8852197 ~ 8852441 (-) True G1381
TU1612 lncRNA downstream 219733 8841478 ~ 8841755 (-) True G1374
TU1595 lncRNA downstream 391657 8650023 ~ 8669831 (-) True G1363
TU1750 lncRNA upstream 98972 9174855 ~ 9179981 (-) True G1492
TU1751 lncRNA upstream 98972 9174855 ~ 9179981 (-) False G1492
TU1926 lncRNA upstream 774808 9850691 ~ 9851427 (-) True G1630
TU1927 lncRNA upstream 776186 9852069 ~ 9852338 (-) True G1631
TU1930 lncRNA upstream 777316 9853199 ~ 9857286 (-) True AMCG00003572
AMCG00003549 mRNA downstream 55697 8987105 ~ 9005791 (-) True AMCG00003549
AMCG00003537 mRNA downstream 310285 8721244 ~ 8751203 (-) True AMCG00003537
AMCG00003538 mRNA downstream 355179 8686046 ~ 8706309 (-) True AMCG00003538
AMCG00003536 mRNA downstream 388612 8653758 ~ 8672876 (-) True AMCG00003536
AMCG00003531 mRNA downstream 777744 8278896 ~ 8283744 (-) True AMCG00003531
AMCG00003548 mRNA upstream 76001 9151884 ~ 9155291 (-) True AMCG00003548
AMCG00003553 mRNA upstream 106218 9182101 ~ 9207165 (-) True AMCG00003553
AMCG00003552 mRNA upstream 177971 9253854 ~ 9254096 (-) True AMCG00003552
AMCG00003554 mRNA upstream 192620 9268503 ~ 9312491 (-) True AMCG00003554
AMCG00003555 mRNA upstream 331494 9407377 ~ 9429572 (-) True AMCG00003555
TU1027 other downstream 3705020 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 4400121 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 5631216 3394657 ~ 3430272 (-) True G531
TU462 other downstream 6622667 2437727 ~ 2438821 (-) False AMCG00003422
TU426 other downstream 6659593 2397642 ~ 2401895 (-) True AMCG00003423
TU2164 other upstream 1875293 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 2027443 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 2847925 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 3000155 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 3959070 13034953 ~ 13035489 (-) True G2236

Expression Profile