RNA id: AMCG00003561


Basic Information

Item Value
RNA id AMCG00003561
length 1998
RNA type mRNA
GC content 0.58
exon number 13
gene id AMCG00003561
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9543949 ~ 9555173 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGCATTTCCAGCACGAGAAGGTGTCTGACGATTTGTCCCCTGCAATGCCAGCCCAGAGAAAAAGCCAACCCCAGAGGAAGTGCGGCTCCTTGACTTGTAGCACCAGGAGGTGGCTGGCGTCGGCCTGTGGGGCCATCTACAGAGCGCTGGCCATGAGTGTGGAGACGGTGTGCTCGCTGTACCAGAGCTTTCAGGAGCGCTCCGGGGGACTGATGGAGGCACAGAGGGACGCTGAGCTGCGGCCCTGTCCCAGGCACATGTCGGCCACGGAGAGGCTGCGCAAGGTCATCCAGGAGCTGGTGGACACAGAGAAGTCTTATGTGAAGGACCTCGCCTGCCTGTTCGAGATCTACCTGAAGCCCCTGCAGAACGAGACCTTCCTCACACAGGACGAGATGGAGTCCCTCTTCGGCAGTCTGCCCGAGATGCTGGATTTCCAGAAGGTTTTCCTGCAGACCCTGGAGGAGAGGATTGCATCCTCCCCGGATTTCAACACACTGGAGACCCCAGGGCAGTTCAAGaAACTCCTGTTTTCCCTGGGAGGATCCTTCCTGTACTACGCTGACCATTTCAAACTCTACAGTGGATTCTGTGCGAACCACATCAAGGTCCAGAAAGTGCTGGAGAGAGCTAAAACGGACCGAGCCTTCAAAGAGTTCCTGGATGCCAGGAACCCCACAAAGCAGCACTCGTCCACCCTGGAGTCTTACCTGATCAAGCCGGTGCAGAGGGTCCTCAAATACCCCCTGCTGCTGAGGGAGCTGGCCATGGAGAAGGTTGCCAGTCACATcaatgaaatgcagaaaatatatgAGGACTATGGGACTGTGTTTGACCAGCTTGTAGCAGAACAAAGTGGAACAGAGAAAGAGGTCACAGAGATTTCCATGGGAGAGTTCCTCATGCATTCCTCTGTCGTCTGGCTCAATCCGTTCCCGTCTCTGGGCCGCATGAGAAAGGACCCTGAGCTCACTGTGTTTGTTTTCAAGAAAGCTGTGATACTAGTCTACCGAGAGAGCAACAAACTTAAAAAGAAGATGaccAATGCCCGTTCGGCCTATTCCCATGGGGATCTGGATCCCTTTAAGTTCCGCTGGCTCATCCCGCTGTCAGCCCTGCAGGTCCGCCTGGGCAACTCCGCAGGAACAGAAACTAACTGCATCTGGGAACTGATCCACacaaaatctgaaattgaaGGGAGACCAGAAACAGCCAACATCATCAAGGTGATTCGCTCCATTCTCCGCGAGAACGTCAGGCGCAACCTGCCCCTGGAGAGGCTCTGCAGAGAGCGTCTCGCACCGCTGAGGAGCACAATGCCCACATCAGCCAGAATTGGTGAGAGAACCGCACAAGACGTCACCAGTTCCTCCCGAGCCGCCTGGTTATGTAAGCAGCCCTCCCTCAACGGAGCGGCAGGCAGCGAGGGGGCCAAGGGGGGCCAGCTCGACTCGGACGAGGGCAGCCTGAGCAGCGGCACCCAGAGCAGCGGATGCCCCGCCACCGAGGGCCCCGTGGAGCCCAAACCTGCCCCCCGCTCGGACCGGCGGCGCGGCATGTCGGAACATGCCAGTGTCAAGGAGTCGGACATCCTGAGCGATGACGACGACTTCTGCGAGACAGCCAGGAGGGAGTCCCCCTCCGACATGATCGAGGCCCGGTTCCAGAGGCTGAAGATCTCGGACGAGGCGGCCCCCCGCGTGCAGCCTGAGGGGGAGGAGCCGGAGGGGCCGGAGAAGCAACCCAAGCTTGTGAGGGCACATTTCTGCCCCATTAAACGGAAAGGCAACAGCCtgagagggaaaaaagggaTTTTGAAAGCCATGAAGGAGCACAACCGCTCCCTGGACAGCCAGTCGGACGGGCCGGCCGCAGACCTCAACGCCCTGCTGGAGCGCGAGTTCAGCGTGCAGAGCCTGGCGTCGGTCGTCAATGAGGACTGCTTTTACGAGCCATCGGACAGCAAAGACACTGCGGCCGTCCCTACCCTATAG

Function

GO: NA

KEGG:

id description
K05731 TIAM1; T-lymphoma invasion and metastasis-inducing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1750 lncRNA downstream 363968 9174855 ~ 9179981 (-) True G1492
TU1751 lncRNA downstream 363968 9174855 ~ 9179981 (-) False G1492
TU1698 lncRNA downstream 468066 9061488 ~ 9075883 (-) False AMCG00003550
TU1656 lncRNA downstream 566100 8974810 ~ 8977849 (-) True G1415
TU1646 lncRNA downstream 579454 8957527 ~ 8964495 (-) True G1405
TU1926 lncRNA upstream 295518 9850691 ~ 9851427 (-) True G1630
TU1927 lncRNA upstream 296896 9852069 ~ 9852338 (-) True G1631
TU1930 lncRNA upstream 298026 9853199 ~ 9857286 (-) True AMCG00003572
TU1935 lncRNA upstream 319497 9874670 ~ 9878381 (-) False AMCG00003573
TU1936 lncRNA upstream 319497 9874670 ~ 9878381 (-) True AMCG00003573
AMCG00003559 mRNA downstream 10372 9532915 ~ 9533577 (-) True AMCG00003559
AMCG00003555 mRNA downstream 114377 9407377 ~ 9429572 (-) True AMCG00003555
AMCG00003554 mRNA downstream 231458 9268503 ~ 9312491 (-) True AMCG00003554
AMCG00003552 mRNA downstream 289853 9253854 ~ 9254096 (-) True AMCG00003552
AMCG00003553 mRNA downstream 336784 9182101 ~ 9207165 (-) True AMCG00003553
AMCG00003560 mRNA upstream 9479 9564652 ~ 9591471 (-) True AMCG00003560
AMCG00003567 mRNA upstream 81298 9636471 ~ 9656474 (-) True AMCG00003567
AMCG00003564 mRNA upstream 119479 9674652 ~ 9686294 (-) True AMCG00003564
AMCG00003566 mRNA upstream 146529 9701702 ~ 9737863 (-) True AMCG00003566
AMCG00003565 mRNA upstream 192591 9747764 ~ 9759310 (-) True AMCG00003565
TU1027 other downstream 4187481 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 4882582 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 6113677 3394657 ~ 3430272 (-) True G531
TU462 other downstream 7105128 2437727 ~ 2438821 (-) False AMCG00003422
TU426 other downstream 7142054 2397642 ~ 2401895 (-) True AMCG00003423
TU2164 other upstream 1396003 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 1548153 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 2368635 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 2520865 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 3479780 13034953 ~ 13035489 (-) True G2236

Expression Profile