RNA id: AMCG00003563


Basic Information

Item Value
RNA id AMCG00003563
length 1335
RNA type mRNA
GC content 0.41
exon number 2
gene id AMCG00003563
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9774896 ~ 9777368 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGTCGGGATTGTTGCGGCGCTGCGTGGGTACGCATGCGCACTGTGGCAAACGTTTCCGTTAGTTGTTGCTAAGCTCTTATAATAATGGCTGTAGTATCTGCGACCTCTAATGGTGTAGAGGAAACTGCAGCAGAAACGACAGCGGCGAAAAAGGGATGGCTATCGAAGAGGACGCAATTTACCTATCGCTGGAAGCCTGCGTGGTTTGTTCTGAAGGAGACCCAGCTCCTGTATGGGGATAATGAAAAGGAAGACCATAAGAAAATCAACCTCGTCGGGGCGAGTATTAAGCCAGTGGAGGACAGTGGTTCGCAGTTCAGCTGGACAGTCACTCCAAAGGAGAGCAAGAGGATCTACTTCCTAAGAGCCAGCAGTgcagaagagcaggaggaatgGATGCAGGCCATCTGTACGGCCCTCATGAGCAGCTCCAGTGGACACGCCTCACACACCTGTATCATACAGTAGCACAGAGAGACACCCACTCCACAGACACGGAGCACTTTCAGATCGATAGTGGACTGGTCCCTCCCTCACGGACTGATCTCACACtttaatatatagatttgttGTTAAACTGCACGATATCTTCCAATTTCGTTTTTTTCAATCAAAAGTCTTCAGAAACATTTGTACTGaaacttaaaatgtttatatagtTGAAAATCAACtttttgtatgaaaacaaatctcagGGTAACATACAATAGTGCtgatttgtgcttttatttgtaatacttttgtatactttttaaagattaaacatccatttaaaaatgtgaaaacaccCAAAGTAATCACTCTGGGACTGTAATTCTCTGAAATCTGGAATGAACCAAGACATTTTTGAATGCTTTTTGAGAAACTCCACCACCCTGTAAACACCCCAACTGTCTGGATGGCATTTAGGACATTTACACAGAACCGTTTCATGCCTATAAATGGCCGATAATTGTactgtaacacatttaaaaagttaacaCGAGTACTAAAATAAGCTTAATGGCAAGTACAAATGCACAGTAGCCACTGTTAAAGCAGCTGTAGAAATCCCCAATCCCAAAACATAACACTCATATGCATGACATCTTTATCCATTTATACTATGTTTTTAACTACTATTATCAAATATGTTTCATTACTGGTTCAACCGATTGCTTTGCAAACTTGTTTGGACTTACATACCAGAGCTTCAGGTCCAATTATCTTGATCAGAAATGAAGTGGTGCAATAGCACCATCAGAATATATGGCCCTAGTGTAACAGTCATGTTTTTATCTgcaaatttgcattttaatatattatttttatttagtcaaACCAGACCATGACCC

Function

GO:

id name namespace
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0051540 metal cluster binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1750 lncRNA downstream 594915 9174855 ~ 9179981 (-) True G1492
TU1751 lncRNA downstream 594915 9174855 ~ 9179981 (-) False G1492
TU1698 lncRNA downstream 699013 9061488 ~ 9075883 (-) False AMCG00003550
TU1656 lncRNA downstream 797047 8974810 ~ 8977849 (-) True G1415
TU1646 lncRNA downstream 810401 8957527 ~ 8964495 (-) True G1405
TU1926 lncRNA upstream 73323 9850691 ~ 9851427 (-) True G1630
TU1927 lncRNA upstream 74701 9852069 ~ 9852338 (-) True G1631
TU1930 lncRNA upstream 75831 9853199 ~ 9857286 (-) True AMCG00003572
TU1935 lncRNA upstream 97302 9874670 ~ 9878381 (-) False AMCG00003573
TU1936 lncRNA upstream 97302 9874670 ~ 9878381 (-) True AMCG00003573
AMCG00003565 mRNA downstream 15586 9747764 ~ 9759310 (-) True AMCG00003565
AMCG00003566 mRNA downstream 37033 9701702 ~ 9737863 (-) True AMCG00003566
AMCG00003564 mRNA downstream 88602 9674652 ~ 9686294 (-) True AMCG00003564
AMCG00003567 mRNA downstream 118422 9636471 ~ 9656474 (-) True AMCG00003567
AMCG00003560 mRNA downstream 183425 9564652 ~ 9591471 (-) True AMCG00003560
AMCG00003572 mRNA upstream 79743 9857111 ~ 9865649 (-) False AMCG00003572
AMCG00003573 mRNA upstream 97322 9874690 ~ 9878444 (-) False AMCG00003573
AMCG00003574 mRNA upstream 331270 10108638 ~ 10115106 (-) True AMCG00003574
AMCG00003578 mRNA upstream 459381 10236749 ~ 10272767 (-) True AMCG00003578
AMCG00003577 mRNA upstream 500872 10278240 ~ 10316839 (-) True AMCG00003577
TU1027 other downstream 4418428 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 5113529 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 6344624 3394657 ~ 3430272 (-) True G531
TU462 other downstream 7336075 2437727 ~ 2438821 (-) False AMCG00003422
TU426 other downstream 7373001 2397642 ~ 2401895 (-) True AMCG00003423
TU2164 other upstream 1173808 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 1325958 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 2146440 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 2298670 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 3257585 13034953 ~ 13035489 (-) True G2236

Expression Profile