RNA id: AMCG00003572


Basic Information

Item Value
RNA id AMCG00003572
length 2603
RNA type mRNA
GC content 0.47
exon number 10
gene id AMCG00003572
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9853199 ~ 9865649 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAAACCAGGGCTGTTAGTACACAGACTGTGTTTAGCAGTATACGATATTATAACATgttgtgaataataatgtagcatttgttttgattatacattttttccctCCACGTCATGCTGCGGAAAACCATGAAAGTATTCATTCAGTCGCTGAAGTTACGCAGGACTTGCAAATATCTCAGTGCAACTACGAGTTTAGCAGGAACATGGAACTTCCCACAGACAAGACTTCACTCAACCCCAGCGCAGCAGAGACCCCCGACGGGCATTTCAATGCTGAAGCACCTGACATCCAAAATCAAATCAACTGGTCCTATTTCAGTGGCAGAGTACATGAGAGAGGTTCTGACCAATCCAGTTTTGGGTTATTATGTCCATAATGACATGCTAGGGGCGGAAGGAGACTTTATAACATCACCTGAAATCAGTCAGATATTTGGAGAGTTGCTGGGAATatggtgtgtgagtgagtggaTGGCTGCAGGAAAACCAAAAAACCTCCAGGTGGTAGAACTTGGTCCTGGAAGAGGTTCTCTGGCCAGCGATATCCTACGAGTGTTCAGTCAGCTGAGCTCAGTGCTGGCTGGCTCTTCTGTGACTGTCCACCTGGTCGAGGTGAGCCCCCGTCTCAGCGAGGTCCAGGCCCAGACCCTGACCGGAGACCAGCACCAGACCGCCGGCACCGAGAACGAGCCGGTGTACCGCAGAGGGACCACCAGCACGGGGCTGCCCATCTTCTGGTACCGGGGCCTAGAGGATGTTCCCAAAGGCTTCAGCCTCTTCCTTGCTCACGAGTTCTTTGACGCCCTGCCCATCCACAAATTTCAGAGAACAGAGCAGGGGTGGCGAGAAATCATGGTGGATATCGATCCTCAGGTGGATGAGAAACTGCGGTTCGTTTTAGCCCCGACTCCCACCCTGGCCTCCTCCACGCTCCTGCAGGTGGATGAACAGAGGGCGCATGTGGAAGTCTGTCCCGAGGCGGGCGTTCTTATTCAGAGGCTGACCGATCGGATTGCACGGGACGGAGGTGCGTCCCTGATAGCTGACTATGGCCATGATGGGACCAAGACGGACACCTTCAGAGGTTTCCGTGGTCACAATCTCCATGAGGTCCTGGCGGCTCCAGGCACTGCAGATCTGACGGCTGACGTGGATTTCGGTTACCTGAGGAGGATAGCGGGAGAGCAGGTGGCTTCTTTTGGTCCCGTCACACAGCAGCAGTTTTTGAAGAACATGGGCATCGATGTGAGGCTGCAGGTGCTCCTGAGGAACTGTGCTGATGCCCCAACAAGGGAGCAGCTGCTGCGTGGATACGATGTGGTGATGAACCCGGAGAAAATGGGAGAAAGGTTCAAGTTTTTTGCCTTAGTCCCTCACAGTAGACTAGCTGTGCCGTCACAGGGCACCATAGCCAAGAAGAAAGGCCCGGCGCCCCCACCTGTAGCCGGCTTCAGCCAGCTGGCACTCTGAACAGCACGACTGGACTCCCAGTTCAACACCAGACCAGGGAGATGCGCCGCTCTCTCCACCGGACTGTGGCACAGGACAAGTGCTTCAAAACCGGCTTCTGAGTGAACTTAAtctaaataaaaagtacatCATATTTATCATTTTGAATCTCTGGTTTTCAGAAAAGAAATCCTCAGCAGGGATTGTGGGTTTCTGTGAATCTGTAATGGATTCAACAGATTTGGCCTGAAAATAGTTCTCCTGCCACGTGGTACCTTCACATCTTGAAATGATTTTAGACGAATGCATAGAAAACACCTTTTGTCCATTCTAAACCATTCAAGAAgtaatttaaacatgaattacaATTCCCtaatgatatatttataaaaacatcaaaggaaactaaaatacaaaaagccaCATCAAAGGTCTACaattttttgcattattattctCTCCTAGTTGCTCCAATAAAGCTATTTCATCTCAGCCCAAAGCTGATGGGCTTACAAAGACCCTGGAACATGGAATATCCTTCTGGAAAAAGTGTCTGTAATGTTTTATCTTCACTAAGTTacttataatatattaatagcTTTAGGCTGAAAATtaactaaatatgtataatttaaggcATATGTTTCCAGAACTACCAACTTTGTTTAATGTCCAATTCTCCCAGATTGCAGACTGTTCATTCCGGGTTAATTATTCTGCTGTtggtaaatataaatgttaggTTATTCCATACAGCTGCTGAATAAGTTGGCAACAAACCAATGTGTTTGACACGTGATGACTATAATACAGGATTTAGGACTCCCAGAATCCCAAGAGATGTGGTGCCCGCTACTTTTTCATGAATTTGTCCTGGGGCAAGATCGAAACGTGGCTGTGGTTCACAAGAAAACTTTCAGACAGTCACACCAGCAATTATATCGGCAGCGTTGGCAGTCGGCCAAAGCAACTGTGCCAACTTTCCTACTtcccttttttttgtaaacctGCTCGTAAATGCTTACCTTGCTTTTTCTCCATCTGTGCACccatttgcttttgtatttaatcGGGCTTTAGCTGTATTAGTGCTTGAGCGTTCCCCATTGCACACGGGGCAGATCTGAAATGCAGAACCGAAACTCTGCGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1927 lncRNA downstream 4773 9852069 ~ 9852338 (-) True G1631
TU1926 lncRNA downstream 5684 9850691 ~ 9851427 (-) True G1630
TU1750 lncRNA downstream 677130 9174855 ~ 9179981 (-) True G1492
TU1751 lncRNA downstream 677130 9174855 ~ 9179981 (-) False G1492
TU1698 lncRNA downstream 781228 9061488 ~ 9075883 (-) False AMCG00003550
TU1935 lncRNA upstream 9021 9874670 ~ 9878381 (-) False AMCG00003573
TU1936 lncRNA upstream 9021 9874670 ~ 9878381 (-) True AMCG00003573
TU1937 lncRNA upstream 9021 9874670 ~ 9878381 (-) False AMCG00003573
TU2052 lncRNA upstream 549289 10414938 ~ 10415887 (-) True G1744
TU2119 lncRNA upstream 759697 10625346 ~ 10626035 (-) False AMCG00003587
AMCG00003563 mRNA downstream 79743 9774896 ~ 9777368 (-) True AMCG00003563
AMCG00003565 mRNA downstream 97801 9747764 ~ 9759310 (-) True AMCG00003565
AMCG00003566 mRNA downstream 119248 9701702 ~ 9737863 (-) True AMCG00003566
AMCG00003564 mRNA downstream 170817 9674652 ~ 9686294 (-) True AMCG00003564
AMCG00003567 mRNA downstream 200637 9636471 ~ 9656474 (-) True AMCG00003567
AMCG00003573 mRNA upstream 9041 9874690 ~ 9878444 (-) False AMCG00003573
AMCG00003574 mRNA upstream 242989 10108638 ~ 10115106 (-) True AMCG00003574
AMCG00003578 mRNA upstream 371100 10236749 ~ 10272767 (-) True AMCG00003578
AMCG00003577 mRNA upstream 412591 10278240 ~ 10316839 (-) True AMCG00003577
AMCG00003579 mRNA upstream 511194 10376843 ~ 10391035 (-) True AMCG00003579
TU1027 other downstream 4500643 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 5195744 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 6426839 3394657 ~ 3430272 (-) True G531
TU462 other downstream 7418290 2437727 ~ 2438821 (-) False AMCG00003422
TU426 other downstream 7455216 2397642 ~ 2401895 (-) True AMCG00003423
TU2164 other upstream 1085527 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 1237677 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 2058159 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 2210389 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 3169304 13034953 ~ 13035489 (-) True G2236

Expression Profile