RNA id: TU1930


Basic Information

Item Value
RNA id TU1930
length 4088
lncRNA type sense_over
GC content 0.51
exon number 1
gene id AMCG00003572
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9853199 ~ 9865649 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAACTTTCCTACTtcccttttttttgtaaacctGCTCGTAAATGCTTACCTTGCTTTTTCTCCATCTGTGCACccatttgcttttgtatttaatcGGGCTTTAGCTGTATTAGTGCTTGAGCGTTCCCCATTGCACACGGGGCAGATCTGAAATGCAGAACCGAAACTCTGCGGGGGGGGGGATTAATATCGCGCAGAAGGAACTCGTCGGGTTCAGCCAGCCACGCTTGAATTATTGAAGAAgggaaagaaaccaaacaaaagaaaacaccagCAGCGGGAACCTGACTTCCTCACTTGCTGCAGAGGCTTCTAGTTTACACAAGGGTCACGACATGAACTGTGTGCGCTGATTCAGTGTGAGGTGTCCTGCTGCCGTGCAACGCAAGTGTCTGTCGGGGCGACTGTAGTCTGCGCTTTGATGCAAAAGGTGTGAACAACATGGCTTTGATGTTCAGTCATCGGACGTTCCAAACAGACCGCTGTCTTTGCGTACAGAAGACCAGCGCAGACAGGTATCAGAGTGGGAGTTTTAAAATGAACGTCCTATTTTACAGAAGGGGGGGGTATCTACTCAGACCAGCTCTATTGCAAGCTGTCTTTTACTTGAAGCACGTGTGGCGTTTCTCACCCGGACTCACTGTATTATACAGAACAAAACGTCTCCAAATCCTCCACCTCTCTTGGCAACAGTATAGAACCACAATGGAATCCTAAGGGAATGTTAAAATGCTGAGTTTTATTCATCTGTAATtactaaaatatacaaaacacttTGAAGACACCTGCCAAGCCAGTGGCAACACAAGATTAAATGATTCTCAGGATAAAAAGTCACCGTGTCTCATTACCTTTTTTCCAGAAAAGCCAGGCTGAAGTTGTGCATAATTTCAGAGACCCTACACACAGAACTGAGCTACATGTCCATTCAGCAGCTTCGCCGAGCAGCCCtttacattgcaaaaataaCTTAAGTGAAAAAAGCACTTTGTGTGACACTGAAcagaaaatataactttttttctttcacatgcaCTGAAAGAGGCCTGCGACATCATTTGGTTTTAACCggtttgttttgtatgaaatGAGAATTTAAGCTCTGCCTTTGTACTGCTAACACCACTGATTATAAGCCCCTGTATACATTGTCCCACATTGCACAggacattaaaatgaattggtTAGTTTTAATTATCCACACCTCATTTATCCCCTGCCGGAGAGAAGTGCACCAACTGGCAACAGGACTGGTATGTTTGTGCTAAAATGAAGTTGTGCTGCCGGTGATGTGTAATTTTTGAGCAAACTATTTTATTCCAAAATGAAAACTTATTATTTAGAAGAGGGCGTGTGACTTTCAGAACTTAGCTCTGTTCAAAGTAGAACGATTACAGTCATTGATCAGAATAAGTCTAGGAGGATGTCTATGTTCTAATAACAGACACCTGTGACTCATAGCATAGCAAGATCAGGCTCAATGGACGGGTGATCTCCTTATCTACAGCTGCAATTCAGGAAACAATGTTATTAGATATTGATtctaaagcaaaacacacaacctgccCGAACCGTTCATGAAAAATTTAGCCTTTTGGTTTTCTCTGGGCTGAATCAGTCTTTAACACATTCTGGAtagcattatttaaaaagcatagtTAAAGGAACAATGTTAATGGACTTCAGCATTAGTTAACGGGGGTGAATGCTTTAGATCAGGGAGAGCCACACTCCTGCACGTTTTCCTGCTCTCTCTCAATCACAAAtcactggataccttgaacacattACAACTGTCTCAATTAAGCCGTTAACAATCTAGGACCCCTGCTTTATATAAATAGTAagaaacagtgttttaattaaaagtgggAAAGTATTGTTTTCCTCCCCCTGGCATTGTTAAAAGTGGATCAAGGCGTTGGCATAACTGACAGGCCTGTACTTTGCTATTTATATGCCCATGCTTAAAggtaaaacaaaccaaaaacacaagtAAACATTTAGGCCATAAAGTCAACTAATCAGCCAAATGTTATATCTTTAATGAagtatagaaagaaaaaaattcaAAGGCCACATATCAGTTTCCTAAAATTGCACTTCTGAAGGAAAGGGAAAGTGAGAGCTGGCTGCACATTTGAACATTGAGAACAGAGCGACATACAACAGACTAGTGGGCTGAGAGGCACAGACTGAGTCACTGCACTGCGGGGTACTTTCCAGTATTCCAGTGCACAAACGTGCCATACCTTTGCCGTACTTAAGTGACAGTATTGGATACAGAAATTAAACCAGAACACGAGATATAAAACTGCAAAGCACGTTTCCACAGAGCACACAGTTTTGTAATACGTTTTGTCGTAAGCGAAGAGCAAgtctgtgtgcttttgttcggcaaaaaaaataaaatgctgcatttCATCGCCTACTGCATCGTCCTTAATTTCATCTTGATTGAATATCATACATTGTAGCATCTTGGTGTAGATCTGTCCTCCTCCGTTTAAGACCTTGTGTTTTACAGTCGGTTAATGTGGTCTTTATGCCGTAGCTTATTTGAAAAATGATCCCAACGGCACTGCTGAGATGTGCGTCGTCCTCATCAATACCAGCGTCACAGCAGCTCTTGTTTTTCAGGAGCAGGAATGTCAGTGGTACAGTATAATCAGAGACATGAGGTTAAACAACAGGAATGTAAGGAAAGAGGAATGAACACAAGTCTTTAAAAAGTTCAGTCACTAGtgatgcaataataataataataataataataataataaaaaataataaaaaataaacaatttctcaACCTCTAAATAACAATTTTCATGATGGGTCCAACAATGCAGCTTTTGCAACTCCCAGAATGAATGGCTTAAACATGCCATAGACATTTCTCATAACATCGGGAAATCTAATTCCCTCCattgaatatgaataattttcATGAGACATGCAATACTCAGTTATCTTCTCCCGCTTGCAGTCAGAAAGCAGTGCCTATTGTGCTATTTGCAGTCAACATATTTCAAGCAATGTTAAGAATGAACTtccataataaataaagcatggCGTGAAGCCTCGACACTAAAAGACCAGCGATcccttttgtgttgtttgctgtTGATTCTGATGCCTTTGGTGGGACTGAGTACAGGGGGACTGTAATGACTTCGTATTGATGTAGCAGCTGTTCAGAATAGATTTCATTTTCCTTAAGGGTCAATCAATGACAAGAACAAAACGTTGACCTCTAGTGCAAAAATGTTCTAACCCCAAATCAATGCACAACATATTCAAGACGAGCATAATGTGATGAGTTCCAGTTTAATACCTTCAAATGAAACCATCTGAAGTTTTTTCTCTAAAATAGCACTCTTAACTTGAGCTTAACTCTTGGAATCTGGTTATGAAGATTCTTTTAGAGATCTTTTCagattctataaaaaaaaaaaggaaagtaggAATAACCTAGCGCTCTTTCTCTTCCGTTTGGTCCACGCTGCAGCCCTTTTCTGGTTTGTGTTTGCATGGGAGGTTTATTCTGAGAGTCCTTTTCTAATGTAAAACCAAGATCAACAGACCTGCAATTTTATGGCTTATAAGAAggcaaggttaaaaaaaaaaaaaaaaaaaagctataaaaAGAGATTCTCATCATAAATCAGGAATATTTCAAACTATAAAAACCTGAAGTCCACGTCACCTCTAGGCTTCACATACACCTCGGTTAAACACCACAAAACGCACCTTCAAGGCACAGTCTGCCATTTCACACAGCGGACCTCTACAGTCCACACCCCCACACATCTCCCATGTTCCGTCTCCCCGGACTGCTCCACCAGAGTCCGACGACGAGCCGTGCCAGATCATCTCGGGTCTCGTGAACAGTTCCCAGGTCTCTTAACTGGCAGGCAGTCTGCCTCTACAAGTCCTCCATCCAGGCCATGGCGCCGCTACGGATCCTCCTCCATGTCGTCCAGGTTGGGCGCCATGATGAAATGTTTTGGATAAGCCAGGTTGTGCGCGTCGGCGTACTCCTCCCAGCGCGCGTCGTCACTCTCGTGGGTGATGTAGCGCTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1927 lncRNA downstream 861 9852069 ~ 9852338 (-) True G1631
TU1926 lncRNA downstream 1772 9850691 ~ 9851427 (-) True G1630
TU1750 lncRNA downstream 673218 9174855 ~ 9179981 (-) True G1492
TU1751 lncRNA downstream 673218 9174855 ~ 9179981 (-) False G1492
TU1698 lncRNA downstream 777316 9061488 ~ 9075883 (-) False AMCG00003550
TU1935 lncRNA upstream 17384 9874670 ~ 9878381 (-) False AMCG00003573
TU1936 lncRNA upstream 17384 9874670 ~ 9878381 (-) True AMCG00003573
TU1937 lncRNA upstream 17384 9874670 ~ 9878381 (-) False AMCG00003573
TU2052 lncRNA upstream 557652 10414938 ~ 10415887 (-) True G1744
TU2119 lncRNA upstream 768060 10625346 ~ 10626035 (-) False AMCG00003587
AMCG00003563 mRNA downstream 75831 9774896 ~ 9777368 (-) True AMCG00003563
AMCG00003565 mRNA downstream 93889 9747764 ~ 9759310 (-) True AMCG00003565
AMCG00003566 mRNA downstream 115336 9701702 ~ 9737863 (-) True AMCG00003566
AMCG00003564 mRNA downstream 166905 9674652 ~ 9686294 (-) True AMCG00003564
AMCG00003567 mRNA downstream 196725 9636471 ~ 9656474 (-) True AMCG00003567
AMCG00003573 mRNA upstream 17404 9874690 ~ 9878444 (-) False AMCG00003573
AMCG00003574 mRNA upstream 251352 10108638 ~ 10115106 (-) True AMCG00003574
AMCG00003578 mRNA upstream 379463 10236749 ~ 10272767 (-) True AMCG00003578
AMCG00003577 mRNA upstream 420954 10278240 ~ 10316839 (-) True AMCG00003577
AMCG00003579 mRNA upstream 519557 10376843 ~ 10391035 (-) True AMCG00003579
TU1027 other downstream 4496731 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 5191832 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 6422927 3394657 ~ 3430272 (-) True G531
TU462 other downstream 7414378 2437727 ~ 2438821 (-) False AMCG00003422
TU426 other downstream 7451304 2397642 ~ 2401895 (-) True AMCG00003423
TU2164 other upstream 1093890 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 1246040 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 2066522 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 2218752 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 3177667 13034953 ~ 13035489 (-) True G2236

Expression Profile