RNA id: TU1936


Basic Information

Item Value
RNA id TU1936
length 992
lncRNA type sense_over
GC content 0.49
exon number 4
gene id AMCG00003573
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9874670 ~ 9878444 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tctgaaagagaaacacaagGACAAAGAGGAAAGAAAGGCGCCCAAAACGATGGAACCCTTTGCTCGAAAAATCTTTAAGGGGGTTTTACTGTTTGAAGTCGCCGGTGTGGTCGGGGCTTACGCGCTCTTCCAAAAGATGAACAGCAGTCAAGGCAGGGGAACATGTCTGCTGTGATTCATTGCTATTATTCCTCATGGAGACTGTGGTCTGGCAATCACAGCTCATTGCCAATGAAATGTATATTCTCACTAGGCAGTAACATTTCACTCACCAGGCTGCTACTTTAGGTTTTGTTCggattttatttctttcaatcCCAGTTGCAATAGTTTACTATGGCGAAAAAGGATTTGTGTGCCGAGTGTACAGTCACCTcgtttgtggttgtcttcatGAACTGGACATGATTAATCTTTAAGTGATTGCAAATTAAACGCACTGTAGACTTGATTTAAGCTGTGCAGGTAAGACAGTGTGATTTTCTTATTCTGCAGATTTCAGAAATACAATGAACAAGAGGTTTCCATCCATTTTGGAAGTTTATTACAAATCCAATGAATGGTCAGGGATTTATGGAATTCGAGAAAAGGACAGAGAGGCCTGGTCAAGTAAAGATGTGTAGAGCCGTTTCTTATTCTTGAAAATCGCCTTCTTCTTCCTGAGAGTTTTGACGTCTCGGCCTCGGATCCATTCGTCTCGGGCCGCCTCCCACTTGAGCTGCTTGATTCCTGGAGAGGGGGAATGAACGGACCACGGTGAGCTCCACAGTCACTGTAGCGCAGAAGACTGAACTGGCCTCTGGCTGATATCGCCCAGGGGTAGCATGGTGTTAATATCGACTGAAGGATTTTACAAACTTTAAACTGGAAGCCTTTTTAAGATTATAAATGAGCAGCTCTCTAGatcacagttttctttaatgttttcagaCTAAGATGTTAGTTATACCTGTTCCCCCCATGATATAAACAGTTTGTAAAgttaatataca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1930 lncRNA downstream 17384 9853199 ~ 9857286 (-) True AMCG00003572
TU1927 lncRNA downstream 22332 9852069 ~ 9852338 (-) True G1631
TU1926 lncRNA downstream 23243 9850691 ~ 9851427 (-) True G1630
TU1750 lncRNA downstream 694689 9174855 ~ 9179981 (-) True G1492
TU2052 lncRNA upstream 536557 10414938 ~ 10415887 (-) True G1744
TU2119 lncRNA upstream 746965 10625346 ~ 10626035 (-) False AMCG00003587
TU2212 lncRNA upstream 1171770 11050151 ~ 11051078 (-) True G1856
TU2311 lncRNA upstream 1503491 11381872 ~ 11386054 (-) True G1935
TU2312 lncRNA upstream 1503491 11381872 ~ 11386054 (-) False G1935
AMCG00003572 mRNA downstream 9021 9857111 ~ 9865649 (-) False AMCG00003572
AMCG00003563 mRNA downstream 97302 9774896 ~ 9777368 (-) True AMCG00003563
AMCG00003565 mRNA downstream 115360 9747764 ~ 9759310 (-) True AMCG00003565
AMCG00003566 mRNA downstream 136807 9701702 ~ 9737863 (-) True AMCG00003566
AMCG00003564 mRNA downstream 188376 9674652 ~ 9686294 (-) True AMCG00003564
AMCG00003574 mRNA upstream 230257 10108638 ~ 10115106 (-) True AMCG00003574
AMCG00003578 mRNA upstream 358368 10236749 ~ 10272767 (-) True AMCG00003578
AMCG00003577 mRNA upstream 399859 10278240 ~ 10316839 (-) True AMCG00003577
AMCG00003579 mRNA upstream 498462 10376843 ~ 10391035 (-) True AMCG00003579
AMCG00003582 mRNA upstream 700517 10578898 ~ 10580325 (-) True AMCG00003582
TU1027 other downstream 4518202 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 5213303 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 6444398 3394657 ~ 3430272 (-) True G531
TU462 other downstream 7435849 2437727 ~ 2438821 (-) False AMCG00003422
TU426 other downstream 7472775 2397642 ~ 2401895 (-) True AMCG00003423
TU2164 other upstream 1072795 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 1224945 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 2045427 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 2197657 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 3156572 13034953 ~ 13035489 (-) True G2236

Expression Profile