RNA id: AMCG00003577


Basic Information

Item Value
RNA id AMCG00003577
length 2419
RNA type mRNA
GC content 0.45
exon number 14
gene id AMCG00003577
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 10278240 ~ 10316839 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTGGCTGGGTTGTTTACGCGCGGGGCATGCTGGGAGCCGGTGCGTATGACAACCGGCGTAAACACAGCAGAGCGGCGCTGCGTCGGGAAGAGCTGTTGAACTCATGGCTTTCTACGAAACAGACTACTTGGAGAAGATCGGAACAATTCAGCAGCGTCTACACGAAAGTGAGAAAAAGAGGctggagctggagagagagctgGCTGCTTACTGCAGGTCTGACAAGAGAGTggcccagattaaaaatgcaaaactgtgcAGTTATCTGAAGGAGATATCTGAAAGAGAGCAACAAGCTAAGATTAGAAACTTTGAGTTTCTGAAAGACATTCAACGTATTGAAATGCATACAGAGGTGCTGGCTCCTTACTCCAGCACCCTACATCAGAAAAAGGAAAAGAAGCTACCAGGACCATCGCCCAATAGTCCCACTGTACATCTCACCAAAGGACTATACCAGCCTGCTACCATCTTTATGGGACGTGAAACCTCAAGTGAAATTCCTGCAATTATGCCATCCTTCCAACCTATACACAGCCTATCGAATCAGCATCTACCTTCTTCCCAGCACGTGGATCATAAAATGTTAAGCAAGTTGAAATTCACAGCACATGGAGCTGTAACATTGGCATGTCACGTAGAAGACCAAACCTACCCCAATGATTACACGAACAGAAGTTCACCTGGGAAAAGGGGAAGACTTGTCCCACCTCCATCAAGCAACCCACAATTACTAAAAGATTCAATCCCACTACAAATTAGTGATTTAACTGAGTCTCACGTTATTCATGTTCCTGAGGAAGGGGTGCTGCCCCAACACAGTGCCCAGCTCAATGAAAGGAAGTCTCCAGGTCCACAAAGCACTGATCTGAACATCTCTGCTAATGTGGAGATCGTGAAAGGATGTTACCCTGATGCTGGTGAAGCTGTGCCTCTCATGGCCCTTCCTGGATCTAGAAATGAAAGTCAGAATAATGCAGaggGGGGCATGAGTACTATTGCTATTTCTAGATTGACTCTGCCAAATGTGGAAAATGACATCGCCGACACAGAAAGTGACTTCTCGATATCTCTGAGTGAAGATGAAGAGTGTTCAGTTTCACCTGAAGATGGGGGAGACACGGGCCTTTCTGCAGATAAGAACGATGCAGTGAGAAGACCCGAGCTCTCCATCACCAAGATAGAGAGATTAATAGTGCACAAGAGGGGAAGGGCAGGCACTCCGGTGCAGTCTTCGCAAAGCAGGTCACCCTTCACAACCCCTGCAGAAAACCTTTTACTTGAGGGATTTGTACATTTACTGAAGAGCATAGAAGGGAGACTGCATCAAGGAGAGAACTGCTTACAGCTCTATAAGACATCATCAGTTACTAAGGAGAAGCGTGATCATTTGATAAGCCTTTGTCACCGCAAGGCGCGCTTGAATGAAGAGGACCTTGAAGCATGTGGAGCAGTCGTCCTTCATCAGCTTCAGAGGTTGTCATGGAGCATGTCAAAGGGATGCTTATTACCCGAAGAGATAGTGAGCAGTGACTGGACCACTATAGATGAAGGCAAAATAAGGTCCTGTCTATCTCCAGATTCTGCAATGTTGTGGGAGTATTGGTACAAACATGTGGTTATTTTGGGTGACTGCCATGTCTTATCCACAGATGAGATAGCTGAGATTTTCACACCATTATTGGTGGCTGAAAACTGTTCAGATATCAACAAGGCCAAAGCGTTACTGAAGACACTTCTTCCACAAGCATCTGAAGGAAGCCTTTCTGTTCAAAGTAATGAATCATCTTGCAGTTTGCCATCAATCCTCAATGACAGTGGTGAAATAAAACCAGCAAAACCTGCTCAATGGTCCTACAGTACTGCCATAGGGAAACAGGGGCCGCAAAGTGGTGAAGAGGACAGCAAAGAGGAGAGCTTGTTGGAAAGTATTCCTATTAGAGAGACTAAAGCATACCAGCTGCTTAAACAATCAGCCGTGCAGCAGAGAAGACCAGACTCTGATGAGGAAGATGAGGTCTCTGATTTGGAGCTGTCAGtactgacaaatgaaaaacacattgacaCAGTCAAGAACGAAGAAGTCCTTGAATCAGAAACGTCTTCTGCTAGTCACAAACGTCCTCACTTTCGGAAGGAGGACAAGAAGAAAACCATATCTACTGTAAAATCCAAGGCTTTCTGGGGTGAATCAGATGACAGCAATACTGACATTGAAGCTGTTTTGTGCCCTCAAACTCACAGTACAAATAATGATGACTTTGATGATTTTTATGACTGATTCTGCTGTCTCCTTGGAAGACATGGGTTAATACGATGCATTAATCACAAATTAATGTGTAATTCGATTAGCAGTGTAATAAATTCTGTATCTGCCACACATTTCcgtgtcatttgttttgtttgttttaatggaag

Function

GO: NA

KEGG:

id description
K16539 PLK1S1; centrosomal protein kizuna

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1935 lncRNA downstream 399859 9874670 ~ 9878381 (-) False AMCG00003573
TU1936 lncRNA downstream 399859 9874670 ~ 9878381 (-) True AMCG00003573
TU1937 lncRNA downstream 399859 9874670 ~ 9878381 (-) False AMCG00003573
TU1930 lncRNA downstream 420954 9853199 ~ 9857286 (-) True AMCG00003572
TU1927 lncRNA downstream 425902 9852069 ~ 9852338 (-) True G1631
TU2052 lncRNA upstream 98099 10414938 ~ 10415887 (-) True G1744
TU2119 lncRNA upstream 308507 10625346 ~ 10626035 (-) False AMCG00003587
TU2212 lncRNA upstream 733312 11050151 ~ 11051078 (-) True G1856
TU2311 lncRNA upstream 1065033 11381872 ~ 11386054 (-) True G1935
TU2312 lncRNA upstream 1065033 11381872 ~ 11386054 (-) False G1935
AMCG00003578 mRNA downstream 5473 10236749 ~ 10272767 (-) True AMCG00003578
AMCG00003574 mRNA downstream 163134 10108638 ~ 10115106 (-) True AMCG00003574
AMCG00003573 mRNA downstream 399796 9874690 ~ 9878444 (-) False AMCG00003573
AMCG00003572 mRNA downstream 412591 9857111 ~ 9865649 (-) False AMCG00003572
AMCG00003563 mRNA downstream 500872 9774896 ~ 9777368 (-) True AMCG00003563
AMCG00003579 mRNA upstream 60004 10376843 ~ 10391035 (-) True AMCG00003579
AMCG00003582 mRNA upstream 262059 10578898 ~ 10580325 (-) True AMCG00003582
AMCG00003584 mRNA upstream 267821 10584660 ~ 10616997 (-) True AMCG00003584
AMCG00003587 mRNA upstream 309028 10625867 ~ 10633112 (-) True AMCG00003587
AMCG00003589 mRNA upstream 554502 10871341 ~ 10944875 (-) True AMCG00003589
TU1027 other downstream 4921772 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 5616873 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 6847968 3394657 ~ 3430272 (-) True G531
TU462 other downstream 7839419 2437727 ~ 2438821 (-) False AMCG00003422
TU426 other downstream 7876345 2397642 ~ 2401895 (-) True AMCG00003423
TU2164 other upstream 634337 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 786487 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 1606969 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 1759199 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 2718114 13034953 ~ 13035489 (-) True G2236

Expression Profile