RNA id: AMCG00003579


Basic Information

Item Value
RNA id AMCG00003579
length 737
RNA type mRNA
GC content 0.47
exon number 4
gene id AMCG00003579
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 10376843 ~ 10391035 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTGTGATGTCGTTGCTAATGGCTTTCCACATCCAGAGTGACGGAGAGAGTGGGAAGCCGTGGAGATGCCGAACTGCAGGGGGAGAGGACAGCCTGGCTTGTCTTGACAGCCTCGGAAAGGTGCAGGATGGACCCTCTCCCATTTCAGTTTATGCATTGCGTCTTGGGCCTGGGGAGGACCTACTGAGCTCTCTGGTCACTTTTGTGGAGGAGAAGAAGCTGAAAGCCCCATTTATCATCACTTGTGTGGGCAGCATCACCAAGGCAACGCTCAGGCTGGCAAATGCCACTGCTTCGAATACTAATGAGATAATCCATCTGAATGAAAGATTTGAAATTGTTTCCCTGGTTGGCACCTTAAATAAAGAAGCTCACCTGCATATCTGTTTGGCTGATAAAGATGGCAAAACTGTAGGAGGACACATTATGGGTGACTTGGAAGTGTTCACTACTGCTGAAATAATCATTGGCGAGGCGAGCAATCTGCAGTTTACCCGAGAGATGGATGAACGCACCGGTTTCCCAGAACTTGTCATTAGCTCTCACTCTAAACCGGCCTAGCAATTTACACTCTGTAGATTATAGCCccctgttttttctctctcttcttttatataaaaaagtgcATTGAATAAATTGGGATGGAGCATGCCTTCTCCGCtcattgcatttctttattgattCAGGCACTTTGATCGAGCAGAGCCTAATCAATTCTTCAGTGAGAAGACGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1935 lncRNA downstream 498462 9874670 ~ 9878381 (-) False AMCG00003573
TU1936 lncRNA downstream 498462 9874670 ~ 9878381 (-) True AMCG00003573
TU1937 lncRNA downstream 498462 9874670 ~ 9878381 (-) False AMCG00003573
TU1930 lncRNA downstream 519557 9853199 ~ 9857286 (-) True AMCG00003572
TU1927 lncRNA downstream 524505 9852069 ~ 9852338 (-) True G1631
TU2052 lncRNA upstream 23903 10414938 ~ 10415887 (-) True G1744
TU2119 lncRNA upstream 234311 10625346 ~ 10626035 (-) False AMCG00003587
TU2212 lncRNA upstream 659116 11050151 ~ 11051078 (-) True G1856
TU2311 lncRNA upstream 990837 11381872 ~ 11386054 (-) True G1935
TU2312 lncRNA upstream 990837 11381872 ~ 11386054 (-) False G1935
AMCG00003577 mRNA downstream 60004 10278240 ~ 10316839 (-) True AMCG00003577
AMCG00003578 mRNA downstream 104076 10236749 ~ 10272767 (-) True AMCG00003578
AMCG00003574 mRNA downstream 261737 10108638 ~ 10115106 (-) True AMCG00003574
AMCG00003573 mRNA downstream 498399 9874690 ~ 9878444 (-) False AMCG00003573
AMCG00003572 mRNA downstream 511194 9857111 ~ 9865649 (-) False AMCG00003572
AMCG00003582 mRNA upstream 187863 10578898 ~ 10580325 (-) True AMCG00003582
AMCG00003584 mRNA upstream 193625 10584660 ~ 10616997 (-) True AMCG00003584
AMCG00003587 mRNA upstream 234832 10625867 ~ 10633112 (-) True AMCG00003587
AMCG00003589 mRNA upstream 480306 10871341 ~ 10944875 (-) True AMCG00003589
AMCG00003586 mRNA upstream 560049 10951084 ~ 10956353 (-) True AMCG00003586
TU1027 other downstream 5020375 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 5715476 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 6946571 3394657 ~ 3430272 (-) True G531
TU462 other downstream 7938022 2437727 ~ 2438821 (-) False AMCG00003422
TU426 other downstream 7974948 2397642 ~ 2401895 (-) True AMCG00003423
TU2164 other upstream 560141 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 712291 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 1532773 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 1685003 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 2643918 13034953 ~ 13035489 (-) True G2236

Expression Profile