RNA id: TU2164


Basic Information

Item Value
RNA id TU2164
length 583
RNA type TUCP
GC content 0.49
exon number 4
gene id AMCG00003586
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 10951084 ~ 10956353 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCGGTGGTTTATGGGATAGTGAAGGAAGTAAGTCGTGCCTTGGTGTCCTTGTACAGCTTTACTGCAAGGAGGAAGACCAATACTCAGCCAAGATGTTCAGAAACTTGCTGGCCCTCCGTCAACTGTCCCAGCGAACGCTCAGCACTGCGGCCCGCAGGCAGGTCCAGAACAAGGTCCCTGAGAAGCAGAAGATCTTCCAGGAGGACAATGGCATTCCAGTGCATCTGAAAGGAGGGGCCGGAGACGCGCTCCTCTACAGGTTAACGATGGCTCTGACAGTTCTGGGAACCGGGTATGTGATCTATGAGCTGCTCAGCGCCGCCCTGCCCAAGAAGAAGTGAATGTCCCGTCCTGGATGTTCATCTCACGTACCTGGAGACAGAGACCGGGTCCAGATGTAAAGATTCCATGTTGATCTTCAGGGAGCTTATTTGTCCTTGTCATAATGAGCTTTTTTGTTCCACATTTAATGGGAtcaatatttattcattgtaCTGTATGAACTGCaaacaataaaagcagttttacaTTAACTGTGAAAGATGTTTGGTTCCTATCTCTTTGTGCCGCTGCAAGGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2119 lncRNA downstream 325141 10625346 ~ 10626035 (-) False AMCG00003587
TU2052 lncRNA downstream 535289 10414938 ~ 10415887 (-) True G1744
TU1935 lncRNA downstream 1072795 9874670 ~ 9878381 (-) False AMCG00003573
TU1936 lncRNA downstream 1072795 9874670 ~ 9878381 (-) True AMCG00003573
TU1937 lncRNA downstream 1072795 9874670 ~ 9878381 (-) False AMCG00003573
TU2212 lncRNA upstream 93816 11050151 ~ 11051078 (-) True G1856
TU2311 lncRNA upstream 425537 11381872 ~ 11386054 (-) True G1935
TU2312 lncRNA upstream 425537 11381872 ~ 11386054 (-) False G1935
TU2313 lncRNA upstream 425537 11381872 ~ 11386054 (-) False G1935
TU2456 lncRNA upstream 776469 11732804 ~ 11863101 (-) True G2044
AMCG00003589 mRNA downstream 6301 10871341 ~ 10944875 (-) True AMCG00003589
AMCG00003587 mRNA downstream 318064 10625867 ~ 10633112 (-) True AMCG00003587
AMCG00003584 mRNA downstream 334179 10584660 ~ 10616997 (-) True AMCG00003584
AMCG00003582 mRNA downstream 370851 10578898 ~ 10580325 (-) True AMCG00003582
AMCG00003579 mRNA downstream 560141 10376843 ~ 10391035 (-) True AMCG00003579
AMCG00003588 mRNA upstream 1074 10957409 ~ 10963201 (-) True AMCG00003588
AMCG00003592 mRNA upstream 14029 10970364 ~ 10996825 (-) True AMCG00003592
AMCG00003595 mRNA upstream 106786 11063121 ~ 11116905 (-) True AMCG00003595
AMCG00003596 mRNA upstream 193734 11150069 ~ 11183677 (-) True AMCG00003596
AMCG00003597 mRNA upstream 292752 11249087 ~ 11250247 (-) True AMCG00003597
TU1027 other downstream 5594708 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 6289809 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 7520904 3394657 ~ 3430272 (-) True G531
TU462 other downstream 8512355 2437727 ~ 2438821 (-) False AMCG00003422
TU425 other downstream 8549281 2397642 ~ 2401895 (-) False AMCG00003423
TU2225 other upstream 146991 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 967473 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 1119703 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 2078618 13034953 ~ 13035489 (-) True G2236
TU2747 other upstream 2148021 13104356 ~ 13111128 (-) False AMCG00003652

Expression Profile