RNA id: TU2119


Basic Information

Item Value
RNA id TU2119
length 690
lncRNA type sense_over
GC content 0.38
exon number 1
gene id AMCG00003587
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 10625346 ~ 10633112 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTACAGTGGTGAAGAAGATGGAGTCACACGTTTTCTGAAAGCATTTACTTTGAATGAATCATAACTAGAGCCTGactgatacaggttttttgggtccgatactGATAACTGGGAAGCTAAATTTCCcgattaccgatatatctgctgatatttactttttttgttagcaagcaaaacacattttctagcatggatccctcaaatctctccctgtctgagagaaattgtcaaatatgcactgaaggcaggatttttatgtttttacattttacataataaacttaacattaattttcatcataaataacaaccacaaatcaaacattgtaaaaataaatacaatagaataAGGTAGaatacaggaaaaatataaaaatatgcatgttctatacattagaacaaagccCAAGGCATAAGAGCAGTTTCacacagaaatggaaaaatatgcaTGAGCAAATAATATGATAGTGTTGGTCTGGTCTGGTCTGTTGGAAGTGCTGGTCTGGCTTATATTTCTCAGAGCTCAACACTGCCCATCACACAGGGGCAGGTTATTACCGTGCAGgcagcccagcacagctgcgtttgttttaaagaaaagtatttaaaaatgcccttgaaagtgtaacttatttaatacgtatattaaatgtattgcaatacgaatcacagccaaaacacgatgtagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2052 lncRNA downstream 209459 10414938 ~ 10415887 (-) True G1744
TU1935 lncRNA downstream 746965 9874670 ~ 9878381 (-) False AMCG00003573
TU1936 lncRNA downstream 746965 9874670 ~ 9878381 (-) True AMCG00003573
TU1937 lncRNA downstream 746965 9874670 ~ 9878381 (-) False AMCG00003573
TU1930 lncRNA downstream 768060 9853199 ~ 9857286 (-) True AMCG00003572
TU2212 lncRNA upstream 424116 11050151 ~ 11051078 (-) True G1856
TU2311 lncRNA upstream 755837 11381872 ~ 11386054 (-) True G1935
TU2312 lncRNA upstream 755837 11381872 ~ 11386054 (-) False G1935
TU2313 lncRNA upstream 755837 11381872 ~ 11386054 (-) False G1935
TU2456 lncRNA upstream 1106769 11732804 ~ 11863101 (-) True G2044
AMCG00003584 mRNA downstream 8349 10584660 ~ 10616997 (-) True AMCG00003584
AMCG00003582 mRNA downstream 45021 10578898 ~ 10580325 (-) True AMCG00003582
AMCG00003579 mRNA downstream 234311 10376843 ~ 10391035 (-) True AMCG00003579
AMCG00003577 mRNA downstream 308507 10278240 ~ 10316839 (-) True AMCG00003577
AMCG00003578 mRNA downstream 352579 10236749 ~ 10272767 (-) True AMCG00003578
AMCG00003589 mRNA upstream 245306 10871341 ~ 10944875 (-) True AMCG00003589
AMCG00003586 mRNA upstream 325049 10951084 ~ 10956353 (-) True AMCG00003586
AMCG00003588 mRNA upstream 331374 10957409 ~ 10963201 (-) True AMCG00003588
AMCG00003592 mRNA upstream 344329 10970364 ~ 10996825 (-) True AMCG00003592
AMCG00003595 mRNA upstream 437086 11063121 ~ 11116905 (-) True AMCG00003595
TU1027 other downstream 5268878 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 5963979 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 7195074 3394657 ~ 3430272 (-) True G531
TU462 other downstream 8186525 2437727 ~ 2438821 (-) False AMCG00003422
TU426 other downstream 8223451 2397642 ~ 2401895 (-) True AMCG00003423
TU2164 other upstream 325141 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 477291 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 1297773 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 1450003 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 2408918 13034953 ~ 13035489 (-) True G2236

Expression Profile