RNA id: AMCG00003589


Basic Information

Item Value
RNA id AMCG00003589
length 9600
RNA type mRNA
GC content 0.50
exon number 60
gene id AMCG00003589
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 10871341 ~ 10944875 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGATCAGGCTGGCGTTGGCAGCAGCTGCCTTGCTGGCAGTGTTGGTTTCCTCAGTCGATGCTCAAGGCATAATTGTCAAGGAGCTAAATCTCCCCTACACTACAACAGAGACCTCAATAACAGATTTAAGTCCGGGTTTAGACTATGAAGTAaccatatattcatattatggATCTGAGGAAAGCATTCCTATCATTGGTCAGCTCACAAAATGTTCAGTGAGTGCCATTGCAGATTTAGTGTTTCTGGTGGATGGATCCTGGAGTGTTGGAAGGGAAAATTTCAAACACATTCGAAGCTTTATTGCTGACCTGGCATCTGCGTTTGACATCGGAGAGGATAAGACAAGAGTTGGAAtcgtgcagtacagtacagacacaagGACCGAGTTCAACctaaatcagtattttaaaagagGCGAACTGCTCCGGGCCATCAACACCTTGCCTTACAAGGGTGGAAACACCATGACAGGTGATGCAATGAACTActtattgaaaaacacatttactgaGCCGGCTGGGGCCAGGAAAGGATTTCCCAAGATTGCAATGGTCATCACAGATGGAAAATCACAGGATCCCGTGGAGGAGTATGCAAGAAAGCTCCGAAACATCGGAGTCGAGATTTTCGTTCTAGGGATCAAGGGAGCAGATGTTGAGGAGCTGAGACAAATGGCCTCTAGTCCCTATAACAAGCATGTCTACAACGTGGCTaactttgatttgattaaaaatgtacagcGTGAGATCATTACCCAAGTGTGTGCAGGTGTCGATGAGCAGCTCAATGAACTTGTGAGTGGAGAAGAAATTATTGAACCAGCCTCCAATTTACAGGTCACAGAAATGTCAGCCAAATCTATGCGGGTAACTTGGGATCCATCCCCCGGCCAAATAACTGGGTACAAGCTGCAGCTCATTCCTATGATATCTGGAAGTGACCGGCAGGAGCTGTACATGGGGCCCTTGGTGACTACCATGACTGTGAAGAACCTTTCTCCCGAAACCGAGTACCAGATTAACTTGTTTGCTCTGAGGGGTTTGACTCCCAGTGAGCCTGTGATGGCCATGGAGAAAACTCAGCCTGTGAAAGTGTCACTGGagTGTTCTCTTGGAGTGGATGTTCAAGCAGATGTTGTTCTCTTGGTCGATGGCTCGTACAGCATAGGATTAGCAAATTTTGCCAAAGTGAGAGCTTTCCTGGAAGTCTTAGTGAACTCCTTTGACATCGGACCCAACAAAGTACAGATCAGTCTTGTCCAATACAGCAGAGATCCCTACACCGAATTTGCTCTGAACACCCACCATGACATGTCCGCTGTGGTCAAAGCAGTTCGGACCTTCCCGTACAGAGGAGGCTCGACAAACACAGGCAAAGCCATGACCTACGTGAGAGAGAAGATATTCATTCCCAGCAAAGGAGCCCGGCCCAACGTGCCTAGAGTCATGATCCTCATCACTGACGGCAAATCGTCGGACGCCTTCAAAGACCCCGCCACTAGGCTACGCAGCACTGACGTAGAGATATTTGCAGTGGGTGTCAAAGATGCCGTTCGATCAGAGCTGGAGGCCATCGCTAATCCCCCTGCAGACACTCATGTGTACACCGTGGAGGACTTTGACGCTTTTGAAAGGATATCCAAGGAGCTCACCCAGTCTATCTGCTTGAGAATTGAGCAGGAACTCAAGATGATTCTGATGAGAActttaagcCCTCCAAGGGACCTCCAGTTCTCTGACGTGACATCCAGAAGTTTCCATGCCAGCTGGTCTTCCGACGCACCGAATGTTATGTCCTTCCTTGTCAGGTTCAGGCCAGTGGCTGGTGGAGATTACGTCTCCATTGCCGTCCCCGCAGACACCACGTCCACGATCTTGCCTCATCTCACCCCTTTGACCAAGTATGAAGTTGAGGTTTACTCCCAATATGAGAGGGGAGACAGCTTTCCCTTGAAAGGAGAGGAGACCACTCTAGAAGAACAAGGAACTCCTCGTAATCTCCGGGTGTCTGAGGAGACGACGGACAGTTTCAAAGTGACGTGGGAAGCAGCACCTGGTCCAGTTGTAAGGTATCGCCTCTCCTACATTCCCACcagtggagagggagagaggaaggagacGGCCACCAGCGGAACCGAGACCTCTATCGTGCTCCATGACCTCCTTCCCCTGACCACATATCATGTATCCGTGTCTGCAGAATATCCCTCAGGGGTTGGAAATGAGATGCAGATTGACGGAATGACTAAAGAAGccAGGGGATCCCCAAGAGACCTGCAGGTTTATGACAACACCGTCTCGAGCATGAGGCTGTCCTGGGAGGCTGCCCCAGGGCAAGTCTTGCAGTACCGGGTGGCATACAGGCCAGCCGctgggggagagaaaaaagagaTCTCTGTCAAGGGTGATGTCACCACCGCGTTGCTGAAGAACCTGCAGCCAGACACGGAGTATGAGCTGTCTGTGAGCGCCCGCTACGCCTCAGGACTCGGGGACCCCCTCAATGGACAAGGAACTACACTGGAAGAACTTGGTTCCCCCCGGGATTTGGTGACAAAGGATGTCACTGACACAAGCTTTGGAGTCTCATGGGCAGCGGCACCGGGGAAGGTTCGGGCTTACAGGATAGCCTGGAAATCACTTTTCACCGAGGAGGCCGGAGAGAAAAGCATTCCCGGAGACGAGACCGAGACCGTGCTGGAGAACTTGACGCCTGAAACCAAATACCAGGTGTCTGTCTATGCAGCATACGGCCGCGGGGAAGGGAATCCATTGGTGGGAGAGGAAACAACAGATGCTTCCGCAGCTGCCAAGACCTTAACCGTGTCTGAGGAAACTGAGAAAAGTATGAAGGTGACATGGGAGCCGGCGCCTGGCAATGTGGTGAACTACAGGGTCAGCTACCGACCAACGGCTGGCGGGCGACAGCTGGCCACCAAGGTGCCTGGGACCATGACAAACACTGTGCTCCGGCGCCTAAAGCCCCTGACCTCATACGACATCATCGTGAATCCGGTCTACAGGCGTGGAGAAGGAAAAGCAAGGCAAGGAGTAGGAGTGACATtgtCACCTTACAAAGGCCCCAGGAACCTACAAACCTCTGAGCCAACTAAGACCAGTTTCCGAGTGAGCTGGGACCACGCCCCGGGAGATGTGCGAGGCTATAAGGTCACCTTCCACCCAACTGGAGAAGACATTGATCTGGGGGAGCTGCTTGTGGGACCCTATGACAACACAGTTGTCCTGGAAGAGCTGAGGGCTGGAACTAAATacacagtcagtgtgtttgGCATGTTTGATGGTGGAGAAAGTATGCCACTCGCTGGTGAAGAAAAGACAACCCTTATGGATGCACCTGAACCCCCTCCGCTTGATAACCTAGATGTCAAGTGTAAGACCACGGCTCAGGCCGACATCGTCCTGCTGGTTGATGGATCCTGGAGTATCGGACGACTGAACTTCAAAACCATCAGGTCCTTCATTGCCCGTATGGTCGGAGTCTTTGATATCGGTCCTGACAGAGTCCAGATTGGTCTGGCTTTGAATTACATTCTTCAGAACAACTTCAAGCCCAACGTAGGACTCCGGCCCAATTCACGCAAGATAGGCGTGCTCATCACTGATGGCAAATCACAAGATGACATCATCGAAAACTCCCAAAACCTGCGAGATCAGGGCATTGAGCTGTACGCTATTGCTGCTGCAACAGCAGAAGCCCCAACAGACCTGGTGACATCTGAAGTCACAACTCGATCATTCAGGGCAAGCTGGACTGCGCCCGGCAGTTCCGTGGACAAGTACCGTGTTCAGTACATGCCTGTGGCTGGAGGCAGGTCTAAAGAGATATTTGTTGATGGATCAGTTACAACAACAATCCTTCCTGATCTGACTCCTCTGACGGAGTATTACGTCAATGTTTATGCCATCCTTGGGGAGCAAAGCAGCGAGCCCTTAAAAGGCACAGAAACCACTCTGCCCCTCGCAGCGGTGAGGAAAATGAATACCTATGACGTGAGCCCAACTACTATGAGAGTGAGGTGGGAGGAAGCCAGTGAGGCCAGTGGCTACATGTTGCTGTACAGCCCAATCAATGCTACAGTACCAGCAGGGGAGAAGGAGCTGAAAGTTGGGTATGATGAGACTGATGTTCAGCTGGTCGAGCTGATTCCCAACACTGCGTACACACTCTCCTTGTTTGCCCTCTATGGAGACGCAACTAGTGATCCTCTAACAACACAGGATGTGACGTTGCCATTACCACCAGCAGGGGAGCTGAGGATCTCCGATGTCACACACAGCACTATGAACCTTAACTGGGATGCGGCACCAGGAAATGTTCGCAAATATATCATCACGTACAAGCCTGTCGATGGAGATGAAGCCAAGGAGATAGAGGTCGGAGGCAGGACAACTACAAAGGTCCTCGATAACCTCATATCTCAGACTGAGTATGACGTGGCAGTCACTCCTGTATACGATGAAGGGCCTGGAAGTCCCATGCTTGGACAAGCTGTGACAGATGTCGTCCCCGCACCGAGAAACCTGAGATTCTCTGAAGTGACATCGACCAGTTTCAGGGCCACGTGGGATCATGCAGCTCCTGACGTCGCTCTCTATAGAGTTGGCTGGGTTAAACAGGGCGACACCGACAGACAATTTGCGATCCTCAACAGCGATGACAACTCCCAAGTCCTAGAGAACCTGGATCCAGACACAATGTATGAAGTTCAGGTCACAGCCATCTACCCAGATGAATCGGAGAGCGAGGATTTAATGGGCAGACAGCGCACACTGCCAATAAAGGTTATAACACCTGCTCCCACAGGTCCCCCTCAGAATATGCAGGTGTACAACGCTACCACGAGCAGCTTAACGGTGAAATGGGACCACGCGCCAGGGAAGGTGCAGAACTACAGGATAACCTATGTCCCTACAGCTGGGGGGCAGCCACAGTCAGAGCAAGTGTCTGGTGGCACAACATCTACTGTTCTGAAGAACCTTCTCTCAGACACGCTCTACAAGGTGACAGTGGTCCCTGTGTATCCTGAGGGGGAGGGCAAACGTctctctgaaaatgaaaagacatTGGTTCGCAGCCCACCCCGCAATATTGAAGTCTTCAATCCAACTCCGAACAGCCTCAATGTGCGCTGGGAGCCTGCGTCGGGCCAAGTCCAGCAGTATCGCGTCACCTATGCTCCCCTGACGGGAACAAGGCCTTCTGAATCTGTGTTGGTGCCAGGAAACACGCACACTGCATTCCTCCAACAGCTCATCCCAGACACTCCTTACAATGTCAATGTTGTGGCTCTCTACTCCGACGGAGAGGGAGCCCCAGTTCCAGGAGATGGGAAAACACtgCCACGCAGTGGACCAAGAAACCTCCGTGTATTTGGTGAAACCACAAGCACTCTGAGTGTCAGCTGGGATCATGCCGAGGGCCCCGTGCAGCAGTACAAAATCACCTACGCTCCCACGACTGGAGACCCGATCGAAGAGTTCACTGTTGTTCCTGGAAGAAGAAACACCGTCACCCTGCAGAACCTGCAGGCTGACACCCCTTACAGGATCAATGTGGTGGCTGTGTACCCTGATGGCGCAGGTGGTGAGCTCACCGGAAATGGAAAGACAGTCGGTCTGCTGGAGCCCCGCAATCTGCGCGTGTCGGACGAGTGGTACACCCGCTTCCGGGTCTCCTGGGATCCTTCCCCGTCGCCAGTCCTGGGATACAAGCTTGTCTACCAGCCCACAGATAAGGATGAAACGGTGGAAGTGTACGTCGGCGATGTCACAACGTATGTCTTGCACAATCTGAACCCTGGCACTGTTTATGATGTCAAAGTCTACTCTCAGTATGACGGGGGAGTGAGTGGTGCTCTGACAGGACAAGGAACCACATTGTACCTCAACGTCACTGACCTTAAAACACACACCGTTGGCTTTGACAGGTTCTGCATCCAGTGGCTTCCTCATAGATCAGCCACTTCTTACCGAATTAAGCTGAATCCTCTTGATGTGTACAGCCTTGGACAGCAGGAGGTCACTGTTAACGGGGGAGAGACAAATTATTGCTTCAGTGGCCTCTCTCCTGATGCCTTATACAATGCCACTGTCTTTGCCCAGACACCCAACCTTGAAGGAGCTGGGGTTAGTGTGAGAGAGCGGACCTTGGTTAAACCCACAGAAGCTCCCACTGAGCCCCCAaccccacctccacctcccacTATTCCACCTTCCTGGGAAGTTTGCAAAGGTGCCAAGGCAGATCTGGTGTTCCTGATTGATGGATCTTGGAGTATCGGTGATGATAACTTCCACAAAgttctgcagtttgtttttgacACCACTGGAGCCTTTGACGTCATCAGTCCAAATGGAATGCAGGTGTCTTTCGTGCAGTACAGTGATGACGCAAAGACCGAATTTAAACTCAACACTTACAAAGACAAGGGCATGGTTCTATCAGCTCTCAAACTTGTCCGTTACAGAGGAGGAAACACCAGAACAGGTGTAGCTCTGAAGTACATCGGTGAGAAGGTCCTGACCCCAGAGAATGGAATGAGGAAGAACGTTCCAAAGGTGCTCGTTGTTGTCACCGATGGCCGGTCACAAGATGAAGTGAAGAAAACTGCCCCTGCATTACAGCATGCTGGCTACAGTGTGTTCGTTATTGGAGTTGCTGATGTGGATTACTCAGAGCTGCAGCAGATTGGAAGCAAGCCCAGTGACCGTCATGTCTTTGTCGTGGATGACTTTGACGCTTTTGAAAAGATTCAGGATAATCTCATTACATTCATCTGTGAGACCGCAACCTCAACTTGTCCTTTGATTTACCTTAATGGGTACACCTCACCAGGCTTCAGAATGCTTGAGGCGTTCAACCTCACAGACAAGACGTTTGCCTCCGTAAAAGGGGTGTCTATGGAGCCAGGATCTTTCAACAGTTTTACGGCCTACAGGCTCCATAAAAACGCATACCTCTCGCAGCCCACAAAAGAGGTCCACCCAGAAGGCCTGCCACCTGCCTACACCCTGATCCTGCTGTTCCGCCTTCTCCCTGACACCCAGACCGAGGCGTTTGACATGTGGCAGATTTCAGATAGCAGCAACAAACCCGAAGTGGGGCTCACAGTTGATCctTCCAGCAAAACATTATCTTTTTACAATAAGGACACGAGGGGAGAGATCCAGAAGGTTACGTTTGATAACgatgaagtgaagaaaatctTCCACGGAAGCTTCCACAAGctTCACATAGCTGTCTCCCCCAAGagtgtcaaaataaatgtggattGCCAGGAAGTGGCAGAGAAAGAAATCAAGGAAGCCACCAACATTTCTACTGATGGCTATGAAGTTCTTGGCAAAATGGTGAAGTCGAGGGGATCCCAAAGAGAGTCGGCCACATTCCAGCTCCAGATGTTTGATATTGTTTGCAGCTTAGGCTGGACCAGCAGAGACAGATGTTGCGACCTGCCATCAATGTCTCTAATGAAagagaAGAGGCGAAATGTCCCGCTCTGCCTCATGCCTGCACCTGTGCTCAGGACAGCATTGGGCCACCGGGCCCTGCTGGACCTCCGGGGGGACCTGGTAGCAAAGGACCTCGAGGTGAAAGAGGAGAAACTGGCCAAGCTGGCCCAGTCGGCACACGTGGGGAGCCAGGGTTACCAGGCCCTATGGGACTTCCAGGCCCTCAAGGACCCAATGGACTGTCTATTCCAGGAGAACCGGGTCGGCAAGGACCGAAAGGTGATGCTGGTGATCCGGGCCTACCTGGACGTTCAAAGTAACCTGTTCTTTGGAGTGTTGAAGGACTGTTTAGAAATGATGGACATCAgGACCTCCTGGCCCACCTGGACCATTAGGACCTGTTGGCCCAGTAGGAGGAAGGGGACCTCAAGGAAAGGAAGGGCCTGCGGGACCCAGGGGCCCACCTGGACCAATGGGGGCTCCGGGATCACCTGGCATGCCTGGATCAAGTGGGAAAACAGGGAAACCAGGAGACTCAGGGCAGCCTGGGCCAGCTGGCATgaaaggagagaaaggggagaggGTGAGTAtaattgtggtgttttttttgtgtgcgcTGGTGTTTTGAGGAGCACGTATGACTTGATCCTAATCAAAAACTGCTTCTTGCAGGGAGACTTTGCATCCCAGAATATGATGCGCTCGATTGCCAGACAAGTCTGTGAGCAGCTGATGAATGgcCAAATGAGCAGGATTGACACTATGCTGAACCAAATTCCCAATGGCTATGTTACTCGCAACAACCCCGGCCCTCCTGGCCCCCCTGGTCCCCCTGGCAGTTCTGGTCCTCAAGGTGAACAAGGACAAGCAGGCCAGAACGGATTCCCAGGAAGTCCAGGCACACCTGGCCGCCCAGGAGACAGAGGTCCACCAGGAGAGAAGGGTGAACGGGGCAGTCCAGGAAAAGGAACCCAGGGACAACGAGGTTTAACTGGACCGCCTGGCCCACCAGGAGAATCTCGAACTGGCCCACCAGGTCCTCAAGGCTCAACAGGGCCTCGTGGTCCACCTGGTCGCCAGGGCCAGGCAGGAGTCAGGGGGCCACCCGGTCCCCCAGGTTACTGTGACTCTTCACAGTGTGTTGGCATTCCTTACAATGGTCAAGGATACCCAGAACCATACCCGCCTGAGCCCGAAACCTATGTAGTTTCCATTCCAGAGGAGCAGCCCGACGACtatgaaacagaaatacagtCCCCCGGTTATTCGCGAAACCAGCGCGGAAAGAGGTCACTATCAAGACAGCAATACGCAAGGATAgcaccataaaaaaaaacaggattgtGTTCTTTTTATGGGAAGTCATTTGCTATTTTCACACATGCTGGTGTTGACAGAATTGGAAGGAAATGTATGAGGGTTTGATACATTTCATAGACGCATGTGTACATTTAGCGAACAAAAGAAATGGCCAAAACATACAAcgcaaaacaaaacccaaacatTATTTCTTAAATGAAACAACCTGTGAGCTTGCTATATGTTCCCTTAAAGTGTCTTTGCTTGTAATATAACTGCCTTAAGTGTATACTAAAGAGTCTAATGTTTAATGCTCTCATCATGTCaaattcagcattttaaaacatccgGAAGAAAGGTTACATTTGTTTGCAGCATGAGGGTATCTAGCAATAAATGGCATGGATCCTTCCCCTTTTGTACATCACCACAAATGTCTTATTGTAAagctgtttgttgttgtaatggaattatatattttgcctCTTTATCTGTCATTGTAAAGAGGAGACTTTGTACAAGATCTACCTACAGTTCACAAAACGTCAATACAGCAGTTAAACATgactttcattttgttattttagactaaatatttaagttttattatACCAACTCACAGCTGATTTTACCAAAGGTGGAATTGCATGTCTGTGTTGTATATTTAGTATGACTGTTAAATTTTTTTATCAGAAtataggatgtttttttttggtttgtttttttcagcgATATTCAATGCAGTTTGAATTTGTGTGCAAGACTATGGACATAGAATTGcttctttcatgtttttaactgcaaattgtgaatttcacagcc

Function

GO: NA

KEGG:

id description
K08132 COL12A; collagen type XII alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2119 lncRNA downstream 245306 10625346 ~ 10626035 (-) False AMCG00003587
TU2052 lncRNA downstream 455454 10414938 ~ 10415887 (-) True G1744
TU1935 lncRNA downstream 992960 9874670 ~ 9878381 (-) False AMCG00003573
TU1936 lncRNA downstream 992960 9874670 ~ 9878381 (-) True AMCG00003573
TU1937 lncRNA downstream 992960 9874670 ~ 9878381 (-) False AMCG00003573
TU2212 lncRNA upstream 105276 11050151 ~ 11051078 (-) True G1856
TU2311 lncRNA upstream 436997 11381872 ~ 11386054 (-) True G1935
TU2312 lncRNA upstream 436997 11381872 ~ 11386054 (-) False G1935
TU2313 lncRNA upstream 436997 11381872 ~ 11386054 (-) False G1935
TU2456 lncRNA upstream 787929 11732804 ~ 11863101 (-) True G2044
AMCG00003587 mRNA downstream 238229 10625867 ~ 10633112 (-) True AMCG00003587
AMCG00003584 mRNA downstream 254344 10584660 ~ 10616997 (-) True AMCG00003584
AMCG00003582 mRNA downstream 291016 10578898 ~ 10580325 (-) True AMCG00003582
AMCG00003579 mRNA downstream 480306 10376843 ~ 10391035 (-) True AMCG00003579
AMCG00003577 mRNA downstream 554502 10278240 ~ 10316839 (-) True AMCG00003577
AMCG00003586 mRNA upstream 6209 10951084 ~ 10956353 (-) True AMCG00003586
AMCG00003588 mRNA upstream 12534 10957409 ~ 10963201 (-) True AMCG00003588
AMCG00003592 mRNA upstream 25489 10970364 ~ 10996825 (-) True AMCG00003592
AMCG00003595 mRNA upstream 118246 11063121 ~ 11116905 (-) True AMCG00003595
AMCG00003596 mRNA upstream 205194 11150069 ~ 11183677 (-) True AMCG00003596
TU1027 other downstream 5514873 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 6209974 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 7441069 3394657 ~ 3430272 (-) True G531
TU462 other downstream 8432520 2437727 ~ 2438821 (-) False AMCG00003422
TU426 other downstream 8469446 2397642 ~ 2401895 (-) True AMCG00003423
TU2164 other upstream 6301 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 158451 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 978933 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 1131163 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 2090078 13034953 ~ 13035489 (-) True G2236

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00024354 False 8928 mRNA 0.53 63 NC_007128.7 49786932 ~ 49977966 (-)
grasscarp (Ctenopharyngodon idella) CI01000029_06606850_06665941.mRNA True 8448 mRNA 0.52 65 CI01000029 6606850 ~ 6666150 (-)