RNA id: TU2225


Basic Information

Item Value
RNA id TU2225
length 430
RNA type TUCP
GC content 0.54
exon number 2
gene id AMCG00003595
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11063121 ~ 11116905 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCATTTAAAAGCTGGCTCACTGAAGGACCCCTTGCTGGACGATCAGGGAGACTTCAACAGGATGTGTGGGGCGATGAAGAAGATCGGCCTGGATGACACGGAAAAGCTGGATCTCTTCAGGGTGGTGGCGGGCGTCCTTCACCTGGGCAACATTGACTTTGAGGAGGCAGGAAGCACATCCGGGGGCTGCACCCTGAAGAACCAGTCCAGCCAGACCCTGGAGTATTGTGCCAAGCTGCTTGGCCTGGACGAAGATGATTTGAGGGTCAGTCTCACCACCAGAGTCATGCTGACGACAGCAGGGGGCGCCAAAGGAACAGTAATCAAGTAAGACACCTCGCAGTCTTGTTAACTGGCAGACAGGGAGCAAAAGTGGTGGTGTGTTGTCCTTTTCTCCTGCATTTATTCATGAAAACAAGACAAGCCGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2212 lncRNA downstream 52248 11050151 ~ 11051078 (-) True G1856
TU2119 lncRNA downstream 477291 10625346 ~ 10626035 (-) False AMCG00003587
TU2052 lncRNA downstream 687439 10414938 ~ 10415887 (-) True G1744
TU1935 lncRNA downstream 1224945 9874670 ~ 9878381 (-) False AMCG00003573
TU2311 lncRNA upstream 277200 11381872 ~ 11386054 (-) True G1935
TU2312 lncRNA upstream 277200 11381872 ~ 11386054 (-) False G1935
TU2313 lncRNA upstream 277200 11381872 ~ 11386054 (-) False G1935
TU2456 lncRNA upstream 628132 11732804 ~ 11863101 (-) True G2044
TU2465 lncRNA upstream 639317 11743989 ~ 11789275 (-) True AMCG00003618
AMCG00003592 mRNA downstream 106501 10970364 ~ 10996825 (-) True AMCG00003592
AMCG00003588 mRNA downstream 140125 10957409 ~ 10963201 (-) True AMCG00003588
AMCG00003586 mRNA downstream 146973 10951084 ~ 10956353 (-) True AMCG00003586
AMCG00003589 mRNA downstream 158451 10871341 ~ 10944875 (-) True AMCG00003589
AMCG00003587 mRNA downstream 470214 10625867 ~ 10633112 (-) True AMCG00003587
AMCG00003596 mRNA upstream 45397 11150069 ~ 11183677 (-) True AMCG00003596
AMCG00003597 mRNA upstream 144415 11249087 ~ 11250247 (-) True AMCG00003597
AMCG00003600 mRNA upstream 241272 11345944 ~ 11366600 (-) True AMCG00003600
AMCG00003602 mRNA upstream 267092 11371764 ~ 11372057 (-) True AMCG00003602
AMCG00003601 mRNA upstream 267692 11372364 ~ 11378357 (-) True AMCG00003601
TU2164 other downstream 146991 10951176 ~ 10956335 (-) False AMCG00003586
TU1027 other downstream 5746858 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 6441959 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 7673054 3394657 ~ 3430272 (-) True G531
TU462 other downstream 8664505 2437727 ~ 2438821 (-) False AMCG00003422
TU2480 other upstream 819136 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 971366 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 1930281 13034953 ~ 13035489 (-) True G2236
TU2747 other upstream 1999684 13104356 ~ 13111128 (-) False AMCG00003652
TU2876 other upstream 2904786 14009458 ~ 14013021 (-) True G2373

Expression Profile