RNA id: AMCG00003596


Basic Information

Item Value
RNA id AMCG00003596
length 2883
RNA type mRNA
GC content 0.48
exon number 13
gene id AMCG00003596
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11150069 ~ 11183677 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCTACATCATAATCAAAGCTTTGTTCACGGTGCTGCAAGATATAAACAGCCAAGAGACTGTGGCCAATTTGAAAAGGACACATTCAGGCCACTTAATAGAGATTTTAAGGACAACCAAACCATCCTCAAATATCAGGTCAATATTTGAGCTGGAAAGACATCGGACAAAAAGATCAGCATTTTTCCACACAGGAGTGAAAGTCTGCCCTCAGGAGACCATCAAAGAAATAATTGCCAGCCACCAAGCTTACTACAAACTACGAGGTGCCTGTTGTTATTCAGTTTGTCAGGAAGCCGTGTGGGAGGCCTTCAGGGTGTTCCTGGACAGGATTCCAGACACTGCCGAGTACCAGCGCTGGGTCACCACATGCCAGCAGCAATCCCTCTGCATCGCGGACCTGGCGAGGAACTTTAGCAGCTCTCAGGAACATCTGGACATGGTTCAACGGaGAGTTCACCTGAGAGATGAAAAGCTGGCAGAACGGGTGGTGAAGACTGAACCAGTGACAGAAAAGGTCCCAGAAACTACAACAGGTTCAAAAGAAACTTTCACTTCAACTCTAGAAGTATCAAGACCAGATGACACCGTTCCTAATGAAATTGTGAATGACACAAAGGTCCCTGACAAGGACCTGGAGCTTGCAAACACAGTGCCTGAGCAGCTGGTGGATCAGGTGGTAGAGTTCAGTGTGACTCTCGTGGATCAAGGCTACTCTGAGCTCCTGAGTGATTCCGACAGCCCCCAGTACCAGGACCTCACCCAGACCCTCTATGATCAGTATGCTTTGACTTCCAGATCTGAAGGCGTGTCTGTTCGTTATGCTGCCGTCTTTGAAATCATATCATCAGACTACAGTAACATTGGTGATGAGATCATGGACCCGATGAGATATGATGAGAAAACCATAGTTTCAGTGTCCAACCTCAGGGAGCTGATAGCCAAAGCCTTGCACGAAGAGAAATCCCTTCTACTGGATCTGGattcaattaatttagaacCAGGTAAGAGGTGGCCCAGTTTGGAGCCAGATTCCCACAATGAGCTAACACTTTCTACAGAGAATCCAGCTCTAGAGGTGGACAAGCCACGGCTTGACCTTCCCGTTGACCCCTCAGAAAAGGATAATGCCTTGGAAACGCTTCTAGGTGCAACAACTGAGAATCAGttgaaagaaaaggagagtAAGGAGGAAGCCACAGGCCAATCCACCACCGACAGCATCGCATTAACAGAACCCACTCACAGTGTCATGCCTACAGTTATGCAGGTCACAATCGACCAGGTCACAGAGGAGGTTACCGTTCACTCCACAGTGGAGGAAACTGACTCCTTACCTGAGACCAGCACACAAATCATGCTCCCCACAACTAGTGCGAACCCTCCTTCCCAAGAGGGGGTTACCATTCACTCCACAGTGGAGGAAACTGACTCCTTACCTGTAACCACCCTGTCCGCTATTACACAGCAGCCACCAACCGAACTGATCATAAGCTTTAAACCAGATGACGAAGGTTACAATGTGATTCCAGAGGGAGGTGACTCCCATTCAGATTCTGAAGGGGGAGAAGCTAAAGGGGAAGTCACAGTTTTACTTGAACCAACTGCTATTGTGCCAGTGACAACATCGGCAGAAGACATCAGCGTAGCAGAAGACACCCCAATAATGCCACCCACATACGAACTACAAACAGACCCTGACACGTCTGTTCCTCTCACCACTACTGCTCCGACAAAGCCTCCAACCGTGTCCAGTGAACCAGACACAATTCTCACACCAGATTTAGGACCCTTTGAAGCAGCTGTCACTGATACCCCCTTAACTAGTTATGGGCCCAGCTTAGAAGCAGCACCAAATGATGTTGGAACTATGAAGCCATCAGTCACTGAGCCTTCAATCACAGACTTTTACACTGAGACCACAAGAGCCGTGCCTTTGACCGTATTAATTGAGACTTCTGTGGAAGAGATGACTGAATCTTCTGTGCGAGAAGCAGTCACGTCGGTGGCACCTTTCACCACACACTATGGATCTCCCAGTCCCAAGCCAACAGCTCCTGAAGAGCAGGAACCAGCAACCCACACGATTGCCCCAACGGTGAAAGACAAGGATATAGACTTTGAAACAGGAGTGCAAGACATCACAGCTGAGCTGGACAGGATTGACGTGGTCGACACTGAGAACATCAATGAACTGGAGTACAGCAGCGGATACCCTTTTGTAACAGACGAACACCCATTTGAAACCACAGCTTCCCCACCACTGAAATATCTGACCACTCCCTCGATGACCACGGCGAGCAAGGGCAAAGAGTTAGTAGTGTTCTTTAGCTTGCGAGTAACTAACGTGATGTTTTCAGATGACCTGTTCAACAAGAGCTCTCCTGAATACAGATCTTTGGAGAATACATTCCTTGAACTGctCCTCCCCTACCTACAGTCTAACTTGACAGGATTTAAACAGTTAGAGATTCTCAACTTCAGGAATGGAAGTGTGATAGTCAATAGCAAGATGAAATTTGCCAAGTCTGTGCCATATAACGTCACCCAGGCGGTGCACTGTGTCCTAGAGGATTTCTGCAACGCAGCAGCCAAGCGTCTTGACATTGAGATTGACAGTCGATCTCTGGATGTGGAGCCGGCTGATCAAGCAGATCCGTGCAAGTTTTTGGCCTGCAACGAGTTTGCAAGGTGTATGGTAAACAGATGGACCAAGGAGgccgagtgtgtgtgtgagccgGGCTACATCAGTGTGGATGGCCTGCCGTGTCAGAGTATCTGTAGTCTCCAGCCAGACTTCTGCCTCAATGGTGGGCAGTGTGAAATAATTCCAGGGCATGGAGCTGCTTGCAGGTACCTGAGACCCAGTAGGCCACACTAA

Function

GO: NA

KEGG:

id description
K19016 IMPG1, SPACR; interphotoreceptor matrix proteoglycan 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2212 lncRNA downstream 98991 11050151 ~ 11051078 (-) True G1856
TU2119 lncRNA downstream 524034 10625346 ~ 10626035 (-) False AMCG00003587
TU2052 lncRNA downstream 734182 10414938 ~ 10415887 (-) True G1744
TU1936 lncRNA downstream 1271688 9874670 ~ 9878381 (-) True AMCG00003573
TU2311 lncRNA upstream 198195 11381872 ~ 11386054 (-) True G1935
TU2312 lncRNA upstream 198195 11381872 ~ 11386054 (-) False G1935
TU2313 lncRNA upstream 198195 11381872 ~ 11386054 (-) False G1935
TU2456 lncRNA upstream 549127 11732804 ~ 11863101 (-) True G2044
TU2465 lncRNA upstream 560312 11743989 ~ 11789275 (-) True AMCG00003618
AMCG00003595 mRNA downstream 33164 11063121 ~ 11116905 (-) True AMCG00003595
AMCG00003592 mRNA downstream 153244 10970364 ~ 10996825 (-) True AMCG00003592
AMCG00003588 mRNA downstream 186868 10957409 ~ 10963201 (-) True AMCG00003588
AMCG00003586 mRNA downstream 193716 10951084 ~ 10956353 (-) True AMCG00003586
AMCG00003589 mRNA downstream 205194 10871341 ~ 10944875 (-) True AMCG00003589
AMCG00003597 mRNA upstream 65410 11249087 ~ 11250247 (-) True AMCG00003597
AMCG00003600 mRNA upstream 162267 11345944 ~ 11366600 (-) True AMCG00003600
AMCG00003602 mRNA upstream 188087 11371764 ~ 11372057 (-) True AMCG00003602
AMCG00003601 mRNA upstream 188687 11372364 ~ 11378357 (-) True AMCG00003601
AMCG00003612 mRNA upstream 301333 11485010 ~ 11487557 (-) True AMCG00003612
TU2225 other downstream 45397 11103326 ~ 11104672 (-) False AMCG00003595
TU2164 other downstream 193734 10951176 ~ 10956335 (-) False AMCG00003586
TU1027 other downstream 5793601 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 6488702 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 7719797 3394657 ~ 3430272 (-) True G531
TU2480 other upstream 740131 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 892361 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 1851276 13034953 ~ 13035489 (-) True G2236
TU2747 other upstream 1920679 13104356 ~ 13111128 (-) False AMCG00003652
TU2876 other upstream 2825781 14009458 ~ 14013021 (-) True G2373

Expression Profile