RNA id: AMCG00003600


Basic Information

Item Value
RNA id AMCG00003600
length 3863
RNA type mRNA
GC content 0.45
exon number 26
gene id AMCG00003600
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11345944 ~ 11366600 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTCACTCGAGGAGGCGCACAGGACGAGTCGCCTGTTCAAAACCGgaacagcattttatttcttgttatgCAAAATCACACCGCTTATGTTATCTGAACACATAGCTGTATATTGGTGAAATTGACAACACGGCCAGCTGCCTGGGGCTTTACAGAGATGTTGCGGTTAAAGTGACTCCGATACGCGTTCCTGGATAGGAGGTTCCCGTCTGCAGAGTGCCCACGATGGAATGCCTGAGACTTAAACTGGAAAACCTCAAACAGAGACTGAAGGTGGATCTTTTCAGAGAAGTCGGTCGCCAGTATCCagtcttctgttttattttgctgctcTTACTTGTGTCCACGGTTCTTCTCAATAGATACCTCCACATTCTGATGATATTTTGGTCTTTCTTAGCTggaattgttacattttactgCTCCTTAGGCCCCGAATCTCTTTTGCCAAACATCCTCTTCACAATAAAGCCAAAAAACAAGCAAGAGCAGCAGGAGCTATTTCCCTTGGGTAACAGCTGTGCAgtctgtggaaaaataaaatgcaagcgTCACAGGGATATTACAGATGATGAAGCATTTGTTGACGAGTTGAGAGTCACGTTGCGCTTCTTTTCTGCGGTCTTAGTTCGCCGAGCACAGAAGGTTGATGTTCCATCTCTCATAACCAGCAAATTGCTGAAAGCCGCAATGAAGCACATTGAAGTAATTGCTAAAGCAAGGCAGAGAgTGAAAAACGCCGAATACCTACAACAGGCTGCGCTGGAAGAGTATGGGCCGGACCTCCACGTGGCTGTGCGCAGCCGGAGGGACGAGCTGCTGTACTTGAGGAAGTTAACCGAGATGCTCTTCCCTTACATCCTGCCTCCCAAAGCATCGGACTGCAGATCACTATCCTTGCTGATTCGGGAGATTCTAGCGGGATCCGTTTTTCTTCCCTCGATGGATTTCTTGGCCGACCCTGATACGGTCAACCATTTGATTCTTATATTCATCGATGACACTCCAcCTGAACCTGCAACCGAGCCACCTTCAATTCTAGTCCCTTTCCTGCAAAAATACGCCGAGTCCAGGAATAAGAAGCCATCTGTGCTGAAACTGGAGCTGAAGGAGATCCGGGAGCAGCAGGACCTGCTCTTCCGTTTCATGAACTTCCTGAAGCAGGAGGGCGCTGTGCACGAGTTCAACGACAAGATCTTATGTCCAGAACTGACAGACTCGGAAATGCTCGCTCTCCACGAGGAAGTGAAGAAGATCTATGGGTCATACTGCCTCGATGAGAGCATTGACAAGATCCGCTTCGATCTGTTCATTGTGGAGGAAATAAGAAACATTGCAGAAGGGCCCTACAAGGACGTTGTGAAATTGCAAACCATGCGCTGCCTGTTTGAGGCTTACGAGCATGTCTTGTCTCTGTTAGAAAACGTCTTCACACCCATGTTTTGCCACAGCGATGAGTATTTTAGGCAGCTGTTAAGAGGTGCAGAATCTCCAGCAAGGAATTCAAAACTAAGCAGAAATAGCCTGAGTTTGGATGACATCCGGAACACCTCGAAACGCGGGGAGTCGTTTGGAATCGGCCGCATCGGCAGTAAAATTAAGggagtttttaaaagcacaacgATGGAAGGGGCCATGCTGCCGTCCTATGGGGTAGCAGAAGGAGAGGACGACATGGTTGAAGAGGCAATCATGGTTGTAGAGGATGACTCCCCGGTAGAAGCCATCAGCACGCCCAGCACACCCCGCAATCTCTCGGCCTGGAAGATAACCATCCCCTACGTGGACTTCTTTGACGACGAGATCAAGAAAGAGAGGATCCCAGTGTTCTGTATCGATGTGGAGCGGAACGACAGGAAGGCGGTTGGCCACGAAACGGAACACTGGTCGGTTTACAGAAGATACCTTGAGTTCTATGTACTGGAATCCAAACTGACAGAATTCCATGATGCTCAACTTCCATCCAAACGAATTATTGGTCCAAAGAATTATGAGTTCTTAATGTCCAAGCGGGAAGAGTTCCAGGAATACATGCAGAAACTTTTGCAGCATCCAGAGCTGAGCAACAGTCAGTTGTTGGCTGATTTCCTGTCCCCCCACAGCATGGAGTCTCAGTTTCTTGACAAAATGCTGCCAGATGTCAATCTTGGGAAAATTATTAAATCTGTTCCTGGGAAACTGATAAAGGAAAAAGGCCAGCACTTGGAGACATTTATCCAGTCCTTCTTCAATTCGTGTGAATCCCCGAAGCCCAAGCCCAGCCGCCCAGAACTGACCATCCTGAGTCCCACCTCGGAGAACAACAAGAAGCTTTTCAATGATCTGTTCAAAAATAACGCCAACCGCTCCGAGAGCACAGAGAAGAAATACAATCAGAACTATTTCATGGAGATGATCAACGTGGAGGGCATCTATGACTACCTGATGTATGTTGATGCGGTGTTCTGTGAGAACAGTGAACCCCGATCCTCCCAAGACAAGCAAAGACGAGCGAAGAAGACCTTTGAAGAGATGATGAGCTACATTCCAGAGTTCTTGGGCAAATGCATCGGGGAGGAGGCCCAGTACGAGGGAATCCGATTGCTCTTCGAAGGGCTGCAGCAACCAGTGCTGAACAAGCAGCTTACCTATGTTCTTCTGGACATTGCTGTTCAAGAGCTTTTTCCTGAATTAAATAAGGTAAACAGGGATTTTATTAAGCTTGTGTTGAAGAACAATCAGtcatcaggttggaacgtttgttgcaatgcctttattacacgtgacgtggagaacagcagtgaatcaagaagaatCCAAAGttgctctgccttcattttaacagtcagagcttttagacacaaaaataaaagagctGGTTATAATCAGAAATTCATTACTGTGTTATCTTAaaagttagctaagcagaatatatatcattataggacagagttagatcaacacatggattagggagcaggcacttcagCTACTAACTGCCAGAGTACAAACGTgactcattttaatatgacaacGTTTTTCCCAAATAccatgtttgaaaatgttatccAGCGTATTTTATACACAAGGCCAAAAACATTGGAAAGAGTTCCAGTTCACAGATACAGTGGGGGATCAGCGTTAATAGTGTCCTTGGCCTGGACTTCGTTACTTTAACCAAACTTTGATGACAGCAAGATGTTTTTTAGAGATTGCATCAGGGTGTTTGttgtatgcattgtgttgcCTGCGTTTAACTGTACCACATCTAGAGACAGCTCTGGGGACAGATACTGTGTGCCTACTTTCATCATAAAAACAATAGTGTTGGGTACATTTCCCCCCATTTTCTCCTCctcaaaacatttgaataatgatCTTTggtgtgatttgtttgtatggAGACGGGTCTAATGTCATTTTGCTCTCCTTCAGCAGGTACAGAAGGAGGTCTCAACTATAGCTCCTTGGATGTAGGAGTCACGCATCGATTGATCCAACGCATGTGCAATACACTGCTGTGAATACCATGTGACCAGCGGTGACAGGATTTCACCTCTTTGCAGTTTGTCCtgattttaaatcatttttattaaaaatgccacaatgaaaaaacaaacaaaaaaagccccCTGCTGAAAACACTAACACTACAATGTATCATATTGCACTAATAAAagatatttattgatttgaaacGTGTTGGATATGTCTTTAGTGTAGCAGTCAAAGCATTGACCACATGATGACACTAAGCAATATGTGTTCTCCCCTAACACAAACCCCATTACCACAGGTTTCAGTGGGGCATTTAGCACATGGAAGTCTTTagtctgtttgtttatataaacaCCAGTGTGGGGGATATGTTTTCCATGTGAAAA

Function

GO: NA

KEGG:

id description
K17926 SNX14; sorting nexin-14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2212 lncRNA downstream 294866 11050151 ~ 11051078 (-) True G1856
TU2119 lncRNA downstream 719909 10625346 ~ 10626035 (-) False AMCG00003587
TU2052 lncRNA downstream 930057 10414938 ~ 10415887 (-) True G1744
TU1936 lncRNA downstream 1467563 9874670 ~ 9878381 (-) True AMCG00003573
TU2311 lncRNA upstream 15272 11381872 ~ 11386054 (-) True G1935
TU2312 lncRNA upstream 15272 11381872 ~ 11386054 (-) False G1935
TU2313 lncRNA upstream 15272 11381872 ~ 11386054 (-) False G1935
TU2456 lncRNA upstream 366204 11732804 ~ 11863101 (-) True G2044
TU2465 lncRNA upstream 377389 11743989 ~ 11789275 (-) True AMCG00003618
AMCG00003597 mRNA downstream 95697 11249087 ~ 11250247 (-) True AMCG00003597
AMCG00003596 mRNA downstream 162267 11150069 ~ 11183677 (-) True AMCG00003596
AMCG00003595 mRNA downstream 229039 11063121 ~ 11116905 (-) True AMCG00003595
AMCG00003592 mRNA downstream 349119 10970364 ~ 10996825 (-) True AMCG00003592
AMCG00003588 mRNA downstream 382743 10957409 ~ 10963201 (-) True AMCG00003588
AMCG00003602 mRNA upstream 5164 11371764 ~ 11372057 (-) True AMCG00003602
AMCG00003601 mRNA upstream 5764 11372364 ~ 11378357 (-) True AMCG00003601
AMCG00003612 mRNA upstream 118410 11485010 ~ 11487557 (-) True AMCG00003612
AMCG00003610 mRNA upstream 161704 11528304 ~ 11542645 (-) True AMCG00003610
AMCG00003611 mRNA upstream 193962 11560562 ~ 11568281 (-) True AMCG00003611
TU2225 other downstream 241272 11103326 ~ 11104672 (-) False AMCG00003595
TU2164 other downstream 389609 10951176 ~ 10956335 (-) False AMCG00003586
TU1027 other downstream 5989476 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 6684577 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 7915672 3394657 ~ 3430272 (-) True G531
TU2480 other upstream 557208 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 709438 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 1668353 13034953 ~ 13035489 (-) True G2236
TU2747 other upstream 1737756 13104356 ~ 13111128 (-) False AMCG00003652
TU2876 other upstream 2642858 14009458 ~ 14013021 (-) True G2373

Expression Profile