RNA id: TU2334



Basic Information


Item Value
RNA id TU2334
length 703
RNA type TUCP
GC content 0.49
exon number 3
gene id AMCG00003606
representative False

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11490185 ~ 11491597 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ACCCCGGCAAACTCTACGTCTTGTATTGTTGCTGATCTCCTTGGGAAAACAGGCGCTTTGCGGGTGTGTTTAGATTTGTGTTTCCCTCCAGTACCCGGGCAATGTCGTCTCAGGGTCCTGACCCGGGCGGTGGCAAGACAGAGCCTGCAGCCGAGAAGGGCTACCGGACCCCCGGGCTGAGGGGAGTGCAGACCACGTCCCTGTTCCGGGCAATAAACCCCGAGCTCTTCATTAAACCGAACAAGCCCGTGATGGCCTTCGGGCTCCTCACCATCTCGCTCTGCGTGGGGTACCTCGGGTACCTTCATGccaccacagaaaacaaacaggactTGTATGAAGCCGTGGACAGCGAGGGAGTGAGTCAGATGAGAAGGAGGACATCCAAATGGGACTGATCGCTGACGGTTTCCTGGACATAAAGACACTCTCTTTGCCTCAATCTATGTTTATGAATTAGAAAAACCGAACAATGTTAATCTGGAGGTTCTGCGGGCCTTCGCGCTTTCTAACGGCGTTGACCATCTCAGCTCTTGTTTTTGGATCCAAACTTTGGTGGTGAAAATCTGAATTCGGTAGCTGGTGTAAATGAATGTTGGAaccgtgtaaatatttgtttcctaGTGAATAAGCAGCAACACATCTGCCGAACATGTTcattatatcaaaataaatacattctgttcAAATGATTTTCCTTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2326 lncRNA upstream 7254 11462338 ~ 11482931 (+) False AMCG00003604
TU2270 lncRNA upstream 87156 11331039 ~ 11403029 (+) False G1902
TU2269 lncRNA upstream 87156 11368023 ~ 11403029 (+) True G1902
TU2254 lncRNA upstream 261910 11227959 ~ 11228275 (+) True G1891
TU2211 lncRNA upstream 439541 11050151 ~ 11050644 (+) True G1855
TU2383 lncRNA downstream 78609 11570052 ~ 11570410 (+) True G1987
TU2400 lncRNA downstream 233640 11725083 ~ 11729991 (+) True AMCG00003614
TU2424 lncRNA downstream 321679 11813122 ~ 11831420 (+) True G2018
TU2434 lncRNA downstream 414540 11905983 ~ 11906188 (+) True G2027
TU2454 lncRNA downstream 534683 12026126 ~ 12028193 (+) True G2042
AMCG00003604 mRNA upstream 7689 11461663 ~ 11482496 (+) True AMCG00003604
AMCG00003603 mRNA upstream 30122 11449320 ~ 11460063 (+) True AMCG00003603
AMCG00003599 mRNA upstream 147161 11316201 ~ 11343024 (+) True AMCG00003599
AMCG00003598 mRNA upstream 217025 11261733 ~ 11273160 (+) True AMCG00003598
AMCG00003593 mRNA upstream 357715 11107394 ~ 11132470 (+) True AMCG00003593
AMCG00003607 mRNA downstream 2509 11493952 ~ 11508306 (+) True AMCG00003607
AMCG00003608 mRNA downstream 18962 11510405 ~ 11515479 (+) True AMCG00003608
AMCG00003605 mRNA downstream 28063 11519506 ~ 11527074 (+) True AMCG00003605
AMCG00003609 mRNA downstream 51124 11542567 ~ 11559145 (+) True AMCG00003609
AMCG00003614 mRNA downstream 234332 11725775 ~ 11727786 (+) False AMCG00003614
TU1883 other upstream 1709283 9777508 ~ 9780902 (+) True AMCG00003570
TU1763 other upstream 2226717 9255828 ~ 9263468 (+) True AMCG00003551
TU1569 other upstream 2837781 8649125 ~ 8652404 (+) True AMCG00003534
TU1202 other upstream 4995280 6487692 ~ 6494905 (+) True G1012
TU2385 other downstream 82288 11573731 ~ 11577329 (+) True G1989
TU2685 other downstream 1545994 13037437 ~ 13042597 (+) True AMCG00003648
TU2754 other downstream 1663617 13155060 ~ 13156627 (+) False AMCG00003655
TU2954 other downstream 2927073 14418516 ~ 14419732 (+) True G2440
TU3283 other downstream 4544220 16035663 ~ 16039640 (+) False AMCG00003712

Expression Profile