RNA id: AMCG00003613


Basic Information

Item Value
RNA id AMCG00003613
length 1413
RNA type mRNA
GC content 0.55
exon number 1
gene id AMCG00003613
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11575865 ~ 11577277 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGTCTGTCCTGGATGGCGTAGCAGATACCACGTTCAGAACCATCACCACTGGGCTGCAGTACCTCGGGTCAAATGACGTCCATTACGATGACCCCGGCGCCGATGCGGACTTCACGAAGACTGGATACGCCTTACAGAAGCTGCCTTTCTCTGCGTTCAGAAGCAACTCGTTCCAGGGCAAGGTGACGGCTGACGAGGAGCTCTTCTTGAAGGGCATCCCCTTCTACCCGACCAACATCACTGACCTATACAGCAACAAAAGCACTGCGAGCAATATGGAGGAGGAGAGCAACATCCAGTGTGGGCAGAACTTCATGGATATGGAATGCTTTATGATCCTGACTCCCAGCCAGCAGCTGGCCGTGGCGGTCTTGGCCCTCACGTTGGGCACTTTCACCGTCCTGGAGAACCTTGTTGTCCTCTGTGTGATCTTCAACTCACGCACCCTCAGAAGCAGGCCCTCCTATCACTTCATTGGCAGCCTGGCCGTGGCGGACCTGCTGGGCAGTGTCATCTTTGTGTACAGCTTCGTCGATTTCCATGTGTTCCACCGGAAGGACACTCCCAATGTGTTTCTGTTCAAGCTGGGGGGGGTCACGGCCTCTTTCACCGCATCTGTGGGCAGCCTCTTCCTCACGGCCATAGACAGATATATCTCCATTCACAAGCCCCTGGCGTACAAGCGGATTGTCACCAAGACGAAGGCCGTCATCGCCTTCTGTATGATGTGGGCCATTTCCATTATCATCGCCGTGCTCCCCCTGCTGGGCTGGAACTGCAAGCGCCTCAACTCTGTGTGTTCGGACATTTTCCCACTGATCGACGAGAACTACTTGATGTTCTGGATCGGGGTCACCAGCGTCTTGCTCCTGTTCATCATTTATGCCTACATGTACATCCTGTGGAAGGCGCACCACCACGCCGTGAGGATGCTCAGCCGTGGGACTCAGAAGAGCGTCATCGTGTACTCCTCCGACGGCACCAAAGTGCAGGTCACCAGGCCGGAGCAAACGAGGATGGACATCCGCTTGGCCAAGACTCTGGTGCTCATACTGGTGGTGCTTATCATCTGCTGGGGCCCAGTCCTGGCCATCATGGTTTACGACCTCTTCTGGAAGATGAACAACTTCACGAAGACCATCTTCGCCTTCTGCAGCATGCTGTGCCTGTTCAACTCCACCGTCAACCCCATCATTTACGCTCTGAGGAGCAAAGACCTGCGGCTGGCTTTTCGCAGCACCTTCCAGCTCTGCAGGGGGACAGCCCAGCCCTTAGACAACAGCGTGGAGTCCGACTACCAGAACAGGAACGCTGCCCACAAAGTGGCAGAGAGCTGTGTGAAGTCCACTGTGAAAATAGCCAAAGCCACCATGTCTGTGTCGACCGAGACGTCTGCTGAGGCAGTCTAA

Function

GO:

id name namespace
GO:0038171 cannabinoid signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004949 cannabinoid receptor activity molecular_function

KEGG:

id description
K04277 CNR1; cannabinoid receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2311 lncRNA downstream 189811 11381872 ~ 11386054 (-) True G1935
TU2312 lncRNA downstream 189811 11381872 ~ 11386054 (-) False G1935
TU2313 lncRNA downstream 189811 11381872 ~ 11386054 (-) False G1935
TU2212 lncRNA downstream 524787 11050151 ~ 11051078 (-) True G1856
TU2119 lncRNA downstream 949830 10625346 ~ 10626035 (-) False AMCG00003587
TU2456 lncRNA upstream 155527 11732804 ~ 11863101 (-) True G2044
TU2465 lncRNA upstream 166712 11743989 ~ 11789275 (-) True AMCG00003618
TU2458 lncRNA upstream 232542 11809819 ~ 11863101 (-) False G2044
TU2475 lncRNA upstream 281644 11858921 ~ 11905671 (-) True G2052
TU2489 lncRNA upstream 449642 12026919 ~ 12027158 (-) True G2066
AMCG00003611 mRNA downstream 7584 11560562 ~ 11568281 (-) True AMCG00003611
AMCG00003610 mRNA downstream 33220 11528304 ~ 11542645 (-) True AMCG00003610
AMCG00003612 mRNA downstream 88308 11485010 ~ 11487557 (-) True AMCG00003612
AMCG00003601 mRNA downstream 197508 11372364 ~ 11378357 (-) True AMCG00003601
AMCG00003602 mRNA downstream 203808 11371764 ~ 11372057 (-) True AMCG00003602
AMCG00003617 mRNA upstream 31886 11609163 ~ 11611680 (-) True AMCG00003617
AMCG00003616 mRNA upstream 130280 11707557 ~ 11720740 (-) True AMCG00003616
AMCG00003618 mRNA upstream 167078 11744355 ~ 11750811 (-) False AMCG00003618
AMCG00003619 mRNA upstream 289445 11866722 ~ 11878169 (-) True AMCG00003619
AMCG00003623 mRNA upstream 344714 11921991 ~ 11927301 (-) False AMCG00003623
TU2225 other downstream 471193 11103326 ~ 11104672 (-) False AMCG00003595
TU2164 other downstream 619530 10951176 ~ 10956335 (-) False AMCG00003586
TU1027 other downstream 6219397 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 6914498 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 8145593 3394657 ~ 3430272 (-) True G531
TU2480 other upstream 346531 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 498761 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 1457676 13034953 ~ 13035489 (-) True G2236
TU2747 other upstream 1527079 13104356 ~ 13111128 (-) False AMCG00003652
TU2876 other upstream 2432181 14009458 ~ 14013021 (-) True G2373

Expression Profile