RNA id: TU2465


Basic Information

Item Value
RNA id TU2465
length 706
lncRNA type sense_over
GC content 0.40
exon number 2
gene id AMCG00003618
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11743989 ~ 11789275 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNNCAACAGTGCGGTATAGAGGAGTGTGCAGTGATCCTGGTCTTCTGTCCTGTTGCCTGTTGCATAGAGATTGATATTGATAATGCCATTCTGGATGTTCCAGTCAATAAGGAGGCCATTCTGGTGGTGATGCACCACACTCACAACCCGGAGCTCATTTTGGCTGAGAGCAGCTCTCTGGTGAAGAACAGGGCAAACATAGTGGGAACTGTGGACTGTCTGTTCCATGAGACTGTGGGATTACTGCAGTGTGGAGTCAACACCCAGGCTGTGAAACAGGTCTCTGACATCTTAAAACCATATACTGCACATGTTTCAAATAATCCGAACTGTGCTTTAATGTAAGTAGGTATACCCAGTGTGCCAGCTGTTAATTAATGTCTATCTCTGTATCTAGTCTATCCATACATATTCACATGTCATTTCAGCATATTCAGAGTGCATGTCAATGTTACTTTGAAAGTTCTGCCAAGTGATTTAAGCTGTGTTTATTGTAAGTGAAATAGTGTGTATTTCATACgtatattgtgtattatttggATGTTTTAACCATTCTCaaagaaattgaatatttaagtGGTGCACATTGATATTTCTTAtcatttgtcttgttttgtacATCCTTCATGTGTCAACATCTTCACTCTTCAACCACCACCATATAAAGTGTTTGAAATAATCattaaagaaagtaaaaacatCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2311 lncRNA downstream 357935 11381872 ~ 11386054 (-) True G1935
TU2312 lncRNA downstream 357935 11381872 ~ 11386054 (-) False G1935
TU2313 lncRNA downstream 357935 11381872 ~ 11386054 (-) False G1935
TU2212 lncRNA downstream 692911 11050151 ~ 11051078 (-) True G1856
TU2119 lncRNA downstream 1117954 10625346 ~ 10626035 (-) False AMCG00003587
TU2458 lncRNA upstream 20544 11809819 ~ 11863101 (-) False G2044
TU2475 lncRNA upstream 69646 11858921 ~ 11905671 (-) True G2052
TU2489 lncRNA upstream 237644 12026919 ~ 12027158 (-) True G2066
TU2494 lncRNA upstream 261970 12051245 ~ 12051491 (-) True G2071
TU2504 lncRNA upstream 278774 12068049 ~ 12068258 (-) True G2079
AMCG00003616 mRNA downstream 23249 11707557 ~ 11720740 (-) True AMCG00003616
AMCG00003617 mRNA downstream 132309 11609163 ~ 11611680 (-) True AMCG00003617
AMCG00003613 mRNA downstream 166712 11575865 ~ 11577277 (-) True AMCG00003613
AMCG00003611 mRNA downstream 175708 11560562 ~ 11568281 (-) True AMCG00003611
AMCG00003610 mRNA downstream 201344 11528304 ~ 11542645 (-) True AMCG00003610
AMCG00003619 mRNA upstream 77447 11866722 ~ 11878169 (-) True AMCG00003619
AMCG00003623 mRNA upstream 132716 11921991 ~ 11927301 (-) False AMCG00003623
AMCG00003627 mRNA upstream 151219 11940494 ~ 11957654 (-) True AMCG00003627
AMCG00003626 mRNA upstream 169297 11958572 ~ 11976961 (-) True AMCG00003626
AMCG00003625 mRNA upstream 286044 12075319 ~ 12078132 (-) True AMCG00003625
TU2225 other downstream 639317 11103326 ~ 11104672 (-) False AMCG00003595
TU2164 other downstream 787654 10951176 ~ 10956335 (-) False AMCG00003586
TU1027 other downstream 6387521 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 7082622 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 8313717 3394657 ~ 3430272 (-) True G531
TU2480 other upstream 134533 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 286763 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 1245678 13034953 ~ 13035489 (-) True G2236
TU2747 other upstream 1315081 13104356 ~ 13111128 (-) False AMCG00003652
TU2876 other upstream 2220183 14009458 ~ 14013021 (-) True G2373

Expression Profile