RNA id: TU2480


Basic Information

Item Value
RNA id TU2480
length 970
RNA type TUCP
GC content 0.49
exon number 7
gene id AMCG00003623
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11921991 ~ 11939783 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAGAGCTTCCTGAGCACTGACTGCGGCGCCTACTGTTGCACAGCTGGGCAGTCAAAGATGAGTCGATGCCCAAAGCTTGGCGGGCCTGGACTAAAGGGGGTTTCTGAGCGTGTTCCTGGATCTGTCAGATTGCACTCATAAATAATGCCTTATTTTGAAAAACtcatgtttttacttttttgccTGATCCTTATGGGGGAGTGCCGAAAGCACAGGACTAGGAGACGGAGATGGACAGGACCCGTGGAGACGCATAAGCATGGCACTCCTTTATCAAAGAAGACACAAGATGTGACGAAAACTCGGAAACTGAAGACGGAACAGCTACTCCGGGTTGATGACCATGATTTTACAATGAGACCAGCGTTTGCAGGGCCTGCGATTCCAGTTGGAGTGGATGTACAAGTTGAAAGCTTAGACAGTATTTCAGAAGTAGATATGGACTTCACCATGACCCTCTATCTCAGGCATTACTGGAAAGATGAACGCCTCTCCTTCCCCAGCACCACCAACAAAAGCATGACCTTCGACGGTCGACTGGTGAAGAAGATTTGGGTGCCTGACGTGTTCTTCGTCCACTCCAAGCGGTCCTTCATCCATGACACCACCACGGACAACATCATGCTCAGGGTGTTTCCTGATGGCCATGTGCTGTACAgtctgagGGTCACTGTAACAGCTGCCTGTAACATGGACTTCAGCCGCTTCCCTCTGGACTCACAGACATGCTCCTTAGAACTGGAGAGCTATGCCTACACCGATGAAGATCTTATGCTGTATTGGAAGAATGGAGATGAGTCCTTAAAAACAGATGAAAGGATTTCTTTGTCCCAGTTCCTCATCCAGAAGTTTCACACTACCTCCAGACTTGCATTTTACAGCAGCACAGGCTGGTACAATCGTCTGTACATCAACTTCACTCTGCGGCGCCACATCTTCTTCTTCCTGCTCCAGACCTACTTCCCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2475 lncRNA downstream 18137 11858921 ~ 11905671 (-) True G2052
TU2456 lncRNA downstream 60707 11732804 ~ 11863101 (-) True G2044
TU2458 lncRNA downstream 60707 11809819 ~ 11863101 (-) False G2044
TU2465 lncRNA downstream 134533 11743989 ~ 11789275 (-) True AMCG00003618
TU2311 lncRNA downstream 537754 11381872 ~ 11386054 (-) True G1935
TU2489 lncRNA upstream 87136 12026919 ~ 12027158 (-) True G2066
TU2494 lncRNA upstream 111462 12051245 ~ 12051491 (-) True G2071
TU2504 lncRNA upstream 128266 12068049 ~ 12068258 (-) True G2079
TU2588 lncRNA upstream 447825 12387608 ~ 12387931 (-) True G2140
TU2590 lncRNA upstream 478145 12417928 ~ 12418336 (-) True G2142
AMCG00003619 mRNA downstream 45639 11866722 ~ 11878169 (-) True AMCG00003619
AMCG00003618 mRNA downstream 172997 11744355 ~ 11750811 (-) False AMCG00003618
AMCG00003616 mRNA downstream 203068 11707557 ~ 11720740 (-) True AMCG00003616
AMCG00003617 mRNA downstream 312128 11609163 ~ 11611680 (-) True AMCG00003617
AMCG00003613 mRNA downstream 346531 11575865 ~ 11577277 (-) True AMCG00003613
AMCG00003627 mRNA upstream 711 11940494 ~ 11957654 (-) True AMCG00003627
AMCG00003626 mRNA upstream 18789 11958572 ~ 11976961 (-) True AMCG00003626
AMCG00003625 mRNA upstream 135536 12075319 ~ 12078132 (-) True AMCG00003625
AMCG00003629 mRNA upstream 139685 12079468 ~ 12130611 (-) True AMCG00003629
AMCG00003631 mRNA upstream 216584 12156367 ~ 12176632 (-) True AMCG00003631
TU2225 other downstream 819136 11103326 ~ 11104672 (-) False AMCG00003595
TU2164 other downstream 967473 10951176 ~ 10956335 (-) False AMCG00003586
TU1027 other downstream 6567340 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 7262441 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 8493536 3394657 ~ 3430272 (-) True G531
TU2508 other upstream 136255 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 1095170 13034953 ~ 13035489 (-) True G2236
TU2747 other upstream 1164573 13104356 ~ 13111128 (-) False AMCG00003652
TU2876 other upstream 2069675 14009458 ~ 14013021 (-) True G2373
TU3027 other upstream 2871003 14810786 ~ 14811331 (-) True G2500

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035194 True 1359 mRNA 0.48 9 NC_007131.7 1158735 ~ 1176631 (-)
grasscarp (Ctenopharyngodon idella) CI01000360_00045139_00056179.mRNA True 1488 mRNA 0.48 9 CI01000360 45139 ~ 56346 (+)