RNA id: AMCG00003627


Basic Information

Item Value
RNA id AMCG00003627
length 3397
RNA type mRNA
GC content 0.47
exon number 8
gene id AMCG00003627
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11940494 ~ 11957654 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGATTAtaaataaagttttgtttttcaaaatcgTCTTCAGTTCCTGTTTTCCGTGTTTTCATGTGACATTTTCGTAAATCGACAGAAGGTGAAAGCAAACCTGTCACCGTCCCATGAACGAAACTAGGAGGATCTACACATCTTATGCCACGTCAGGACATGTAAATTAACAGCACAGTCGCCACCACACGATAAGCAGACGACATGTCTGTGTAGCGCACTGCTTCTCTGGCCGGGCTATGGGAACTTTTCGGTaccagaaataaacaaacaaaaagtgacaCTTGGAAATCGCTCGGACCAAAGCGGGCTGGACTCCGTGAGCGCCAGACGTACGGGCTCCCGGTTTTGCCGTGTCCATCTGCACAGGTAGAGATGGAAAGCAAGTACAACCTCAAGAGCCCCGCTGTGAAGCGGCTGATGAAGGAAGCAGCTGAACTCAGGGATCCGACAGAACATTACCATGCACAGCCCTTAGAGGATAATCTTTTTGAGTGGCATTTCTCAGTACGGGGGCCTCCTGACTCTGATTTCGACGGTGGCGTGTATCATGGGAGAATAGTACTTCCTCCAGAATACCCTATGAAGCCTCCCAGCATTATACTCCTCACCTTCTTCTTTCAGCCCAATGGAAGATTTGAAATTGGCAAGAAGATCTGCCTGAGCATCTCAGGACACCACCCCGAGACCTGGCAGCCCTCCTGGAGCAtcaGAACTGCTCTAATAGCTATTATCGGATTCATGCCCACCAAAGGAGAGGGTGCAATAGGTTCTCTTGATTACACTCCTGAGGAGAGGAAAGCACTGGCCAAAAAGTCCCAGGACTTCTGCTGTGAAGCTTGTGGCTGCACCATGAGGACTGCTCTGCTTCCTCCCACCTCCAACAGCAACCCCAGCCAGGAGGACAAGGAAGCCAAAGAACTAGCCAGACAGATCAGCTTTAAGCTGCCAGCAGAGTCAAGTACATCCAGTAAAGCTGACCAGAGCCAGGGAGCAGAGAGTGAGCCCCCCTCTGAGTCTGAGATGCTGCCACAGGCCTCTGCATCAAGGGAACAAGCAGCAACGGCCGCCACTGCCCAGCCTGACCAGGCTGAAGCTCAACCTGCCCCCAGCGAAGAAGCCCCCCCGGCCATCCCCAGCAGCCGTCCTCTGAGTCCCCGGCAGCGACGTGCCCAGCAGCAGACGCAGCACCCCCGGAGGCCAGCCTCGCCCGCCTTCCCCCCGGCCCAGCAGCGCGCTCCGGATGCCAGTCACACCGGCTCAGCCATCCTGATCGTGGTGCTCACCCTTGCCCTGGCAGCCCTCATCTTCCGCAGAATCTACCTGGCCAACGAGTACAAGTTTGATTATGAACTGTAGCCCCCCCGCTGTGCTGCATCCCTCCCACAGCCCAGATTGGACACATTACAGCAGCTTCTAATCCTGTAGACTATTATATCATCAGTTGGTTTAGAGCTGTGTTTTTAGGTGGCTTTCAGGCAGTAAGTAAAGAGGATTTGCCTCCACTGTTTTGTCTACACTATTGGTGTAACTTATCAATCTGAAGATGAAGGTCAAAGAAGCAGACAAccttcttatgttttttttgtttttcccaaacTCTCACAAAgcaggagggaaaaaaaaaacattaaaatctgtCTGTCTTCTCTGCCTGTCGCTTAACATGCTCTTAAAATTAATCACTTTACGTATTGCAAATCTGTATATTAACTTTGAACTGCGTGCTTCCAAATGTTTActtagaaatattaaatattaaacagctGAAAATAAAGGTTCATCATTGgtagcctttttttttcccctacttATTGTGAATCAGTGCTCTTCAGTTGTAGTGTAGCAGTCTGGGAATGTGACATGGACTGGAGGCCTGGCAGTGCGTGTGTctggtttttctttttgtttgcatgcgtgtgtttgtttgtcgGTTCCTTGTGTCAGGGGTGGGGCAGATCGATTGGGGAGCAGATTTGATGAGTGGGAAATTATGGTGGCTTCCGGGGTCAAAGGCTGGCCCCGTGTGGGAAAGGGTGGGGCAGGGGCATAGATATATATCCGGGTTCCCCGGTCCCTCAGGGAGATGAGAATTGGATTTGGAGTGAGACTAATGCCTCCAGGCCCTCACAGTATGTATGGGTGTTTAAACCGTGAAATTCTGGCCTCGTTACATATCTGAATCTGGCTCCTGGGCGGGGGTTATGGGGACTACAAAGATACTAGTTACTAAACCAAAGGGCTCtcaagttttaaatgcatttatttctcactatagaattattattgttttacttttgccATGATTTTCAACCATGTATTTCAGTaggtaaaacacaaaaatgcaaaaagacaCAATCAAAACATTGTGATCCGTCATAGGAATCGACAATTTCACTATCTTTCACTGCCACATACATAATGCGTCATTGACTTGCTACTCAGCACATTCATTATGCGTAACGTCAGTCGCTCGGCTCACCTTTTAATAATGCGAGCCCAACGTGCCGAACCATACCAGGCAGGCACGGTGCGGCCCTGGCTTGGCTCGTGTATGCTAGTGTAAACCCAGCAGAAGTGTGGTGTGGTGTTGCTCTGCATGAACCCCGAGTcttgttatttgttgttttcttcaagcCAGTGAATCCAAGTCACAAGAAGCCTAGAATGCTACAGTAGTAAATCTCTTACATTTTTTATCAGAATTTATATTGCCAATATTCTTTCATTCTTATCTTCTTTGCAAATCCAAGAGTTCATTACAGAATGGAGCATAAGCAAGTGCTCGATGTGATAACACAGAAGCCTGACTGAAGGATTGTAAGGTCAGTCTTTTGAAATGAGGAAATTAAAAGAACAGTGTCAGTGCTTAGGCATGAGTCTGTCCTGAGCTAGAGAGGGATTTACTGCCTAATAGtggatgtttaaaaatatataataataataataaacggcATTATCACTGGGTGGcatggtggcacagtggttagcacagctccagggtcctgggtttgagtccctgcttggggtgcctgtctgtgtggagtttgcatgttctccctgtgtcagcgtgggttttctccgggcactctggtttcctcccactgtgggttaggttaattggcttctctaaattgctttgtgtgtgttgaccagtgatggactggcatcgtgtcctgggtgtattcctgccttgtacCATATGCCTTCCAGGatcagctccagcttcccctgcaaccctcaccaggataagtggttttgaaaatggatggatggcaTTATCACTTAAATCAAGAGTGTATGTTCTAATTGTTTTAATCGTGTATGTCCATCATTGCAATGCAACttgcacatttttgtatatatttaaatatgtatatgtgaagTGTAATAAAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K10578 UBE2J1, NCUBE1, UBC6; ubiquitin-conjugating enzyme E2 J1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2475 lncRNA downstream 34823 11858921 ~ 11905671 (-) True G2052
TU2456 lncRNA downstream 77393 11732804 ~ 11863101 (-) True G2044
TU2458 lncRNA downstream 77393 11809819 ~ 11863101 (-) False G2044
TU2465 lncRNA downstream 151219 11743989 ~ 11789275 (-) True AMCG00003618
TU2313 lncRNA downstream 554440 11381872 ~ 11386054 (-) False G1935
TU2489 lncRNA upstream 69265 12026919 ~ 12027158 (-) True G2066
TU2494 lncRNA upstream 93591 12051245 ~ 12051491 (-) True G2071
TU2504 lncRNA upstream 110395 12068049 ~ 12068258 (-) True G2079
TU2588 lncRNA upstream 429954 12387608 ~ 12387931 (-) True G2140
TU2590 lncRNA upstream 460274 12417928 ~ 12418336 (-) True G2142
AMCG00003623 mRNA downstream 13193 11921991 ~ 11927301 (-) False AMCG00003623
AMCG00003619 mRNA downstream 62325 11866722 ~ 11878169 (-) True AMCG00003619
AMCG00003618 mRNA downstream 189683 11744355 ~ 11750811 (-) False AMCG00003618
AMCG00003616 mRNA downstream 219754 11707557 ~ 11720740 (-) True AMCG00003616
AMCG00003617 mRNA downstream 328814 11609163 ~ 11611680 (-) True AMCG00003617
AMCG00003626 mRNA upstream 918 11958572 ~ 11976961 (-) True AMCG00003626
AMCG00003625 mRNA upstream 117665 12075319 ~ 12078132 (-) True AMCG00003625
AMCG00003629 mRNA upstream 121814 12079468 ~ 12130611 (-) True AMCG00003629
AMCG00003631 mRNA upstream 198713 12156367 ~ 12176632 (-) True AMCG00003631
AMCG00003632 mRNA upstream 298815 12256469 ~ 12283492 (-) True AMCG00003632
TU2480 other downstream 711 11923808 ~ 11939783 (-) True AMCG00003623
TU2225 other downstream 835822 11103326 ~ 11104672 (-) False AMCG00003595
TU2164 other downstream 984159 10951176 ~ 10956335 (-) False AMCG00003586
TU1027 other downstream 6584026 5345839 ~ 5356468 (-) True AMCG00003484
TU920 other downstream 7279127 4650771 ~ 4661367 (-) False AMCG00003476
TU2508 other upstream 118384 12076038 ~ 12078152 (-) False AMCG00003625
TU2704 other upstream 1077299 13034953 ~ 13035489 (-) True G2236
TU2747 other upstream 1146702 13104356 ~ 13111128 (-) False AMCG00003652
TU2876 other upstream 2051804 14009458 ~ 14013021 (-) True G2373
TU3027 other upstream 2853132 14810786 ~ 14811331 (-) True G2500

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00063298 True 1647 mRNA 0.48 3 NC_007117.7 59967994 ~ 59972559 (+)
grasscarp (Ctenopharyngodon idella) TU806595 True 45294 TUCP 0.36 3 CI01180000 10819986 ~ 10866176 (+)