RNA id: AMCG00003632



Basic Information


Item Value
RNA id AMCG00003632
length 5272
RNA type mRNA
GC content 0.43
exon number 15
gene id AMCG00003632
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 12256469 ~ 12283492 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGGCATCTTTGTAAGGAACACCCACTtcctggagctgctgcagcaaCTGcggaaaaatagaaaaaaaggaaaaaaaacgtAGTCAATGAAAGCTGCACTTTAAAGTTATACCGCTTAATCAAATGGGTCCAAAGTACTTCTATTGTGTGTTGGATCCCTTCATTTGCACCGAGTATAGGCGCATGTAATTACAGTCCATTTCGTGCACCCGGGCTCAAGACCAGGCGCTGCGCCGATGTGGGGAGCTCGGTCTGCGGAGAGGGGAAGTCACTCCAGCCCGAGGCTGTAATCAGGCCAGCCGCGGCCTAGGCGCTCAGTGGGAACTCCTCGCACAGGGACATTAGTTTCGAGTCTGTGTCTGCGTACATTGTGTTTACGTGAGGATTTGTTTGTGCggtttttaaattacacattttttccTGTAGCACCAAACGATATTACTAACTAGTGGGGGCtttttttccagcttttgaAGTTGTTGACATAAGTTTTCAAAGTGAGACGTGCTCCAGCCCGATCAGTTGTTTACGGGATTAGTGTCCTGCTCTGATTCAATACGGTAATATTACTGTGTTGCCATGAATGTGATCTGAATGTATCCACATTATCCggatgtttattatttttgatcgACCATCATGTCTGCACCATCCGCTGAAATGATCGACACGCCACCTGGGTACCCCTTCGAGGAGATTGAATACACGGATATTGAGGTGGAAGAGGTTGTCGGGAGAGGAGCTTTTGGTGTGGTCTGCAAGGCTAAATGGCGAGGCAAAGATGTGGCAATCAAAACTATAGAAAGTGAAtctgaaagaaaagcatttataGTGGAGCTGCGACAACTCTCCCGTGTTAATCACCCGAACATTGTGAAGCTCTATGGATCATGTAGTAATCCAGTTTGCCTAGTTATGGAGTATGCCGAAGGAGGATCCTTATACAATGTGCTGCATGGTGCCGAGCCCCTCCCCTATTACACAGCCTCCCATGCCATGAGCTGGTGTTTACAATGTTCCCAAGGAGTGTCCTATCTCCATGGCATGAAACCAAAGGCTCTTATTCACAGGGACCTCAAACCACCAAAGTATGCATTCTCCGACACTCGCAGCAATTACAGTGAAAAGTGTGATGTTTTTAGCTGGGGGATTATTCTCTGGGAGGTGATAACCCGCAGAAAACCTTTCGATGAAATCGGAGGACCTGCCTTTCGAATCATGTGGGCTGTGCATAATGGTACTCGGCCGCCCTTGATTAAAAACCTCCCCAAGCCCATAGAGAGTTTAATGACACGTTGCTGGTCCAAGGACCCTTCGCAGCGGCCTTCCATGGAGGAAATTGTTAAGATTATGACTCATCTCATGCGGTACTTCCCGGGATCTGATGAACCACTTCAGTATCCCTGCCAGTATTCTGATGAAGGACAAAGCAATTCAGCCACTAGTACAGGATCCTACATTGACTACAACTCCACCAACACAAGTAACAAAAGCGATATCAATATGGAACCTGGAGACTCCCAGGTCAACGACACTATAAAGAGGAATGAATCCAAATTTATACCACAATTCAAGCCCAAGGTGGAAGGGATGCGCTCATCTCTGCCCCTGTCCAGAGGGGGCAGCGTGGAGAGCCTGTCAGAGTCGCGAGGACGGCCACAGTCTGTGGTGTCTGTGGACAACAAGAGGATGAGTGCAGACCTGTCTGAGCTGGAGCCTAGGGTGACCTTCGTAAATCCAGGAGCAAACAGTGAGCCTCAAAGACGCAGATCTGTGCAGGACCTTCAAGGGATAGGGACAGAATCCAGTCAGGGGAGTCGGAACAGCAGCCGGTCGTCCAGCCCCAGTTTGAGGATGATCACCTCCACGGAAAAACCAGCCAGGAATTACGGTTTCTCACCGGATGATTCTACAGACACCAACGGCTCAGATAATTCCATTCCCATGGCCTATCTTACACTGGATCACCAGTTACAGccACTTGCTCCTTGTCCAAACTCCAAAGAATCCATGGCAGTGTTCGAACAACATTGCAAAATGGCCCAGGAATACCTGAAAGTCCAAACCGAAATTGCTTTGCTGATACAGCGAAAGAACGAGCTGATCGCAGAGCTGGACCAGGACGAGAAGGACCAGCAGAACACGTCCCGCTTGGTCCAGGAGCACAAGAAACTCCTGGAGGAGAACAAGAGTCTCTCCACGTATTTCCAGCAGTGCAAAAAACAACTTGAAATCATCCGAGCCCAGCAACAAAAGCGACAGGGCACTTCCTGAGGCCATTGCAGACGCCTACgcctgcccctgcccccccgCCATGCTGCAGAAGAACGGACTGCTCACGTGTTGTAATCTTTCCTGCCATTACAGGTGGCTTGTTTTAAGGATTAGCATCTTGGTGTGGAAGCCTATACATCCTCTGCAActgttttcttcccttttttttaaatattattttatttgtcttctcCCTCTTAGTGAAACTATTAATCCTGGGTCAGTATGACAGAGTTGGTTGTGGCTTTTCTTGCACTGTAAAGAGACCTATGATCTACTGTGTTTAAGCATGCTGCAATTCATCCATTGGTCCGGGGAGGGGTCTGGGCTGAGTGTCAGTGCTGGACTTGGCATTAGGATGCGTTATGGTTTCGTTTAACGGCATCGATTCTCAAAAATAGGCAAGAGAAACTAAGATTAATGATACCACCTTTCCCCTGTGCGTAGTGCGAGGGATATCGGGATTGTGCTACGTGTTACTTGGTCGGTGAAGATGGCCCATATAAAATAGTTCAGGTGATGTcggttttcatttaatatagtATCATCTGGGAGAGCTCACAAACAGGGCTGTAACCCacttttctttctaaataaGTCATTGTCATCATGTTTACCCCTTTCAGAACGATGTATTGCACAGGAGGAAATTTCCACAAAAGACTGTTCGTAACGCTGGCGTCCTCTCGGCATCAACACAGGAGGGAGATGGGAAGGTTTTGAAAGCATGTGCAATAAGTGCGAGTCGGTGTCGGTTGCCAGAGTCTCTTGTGGAATATCGGCCACTCGGACAAGATGACCGTTGTGTTCTGAGATTAATATGCAATTAAGATGCACAAGAATGACTTCTAATTCACCGTTGTCACCGTTTAACATTGAGTGGATGTTGAGACAAGAACTGTAAACTTGCCGTCATCCTGTTATGGCCATTTCTCAAACAGAGGGAGATGTATACTCTCTCCACGGCAAAAGCAAATGTGCAAACGGGTAAAATGACTTTTGGGTCATGACCGATCTCTACCTATGCTTTTTGGAATCTGAGACCATCGAAGGTTATGGAACATGTAGGTCACAGTTGGAAACCCCCATCATGGAGCTGGGCCCGAGCATCGCTTCTGTACATAGGTCACAGTATTACACTGCGCCATTTAGGAACTGCTCACTTGCAAAAAGTATTTGTAGATATTGGTTTTAATGTGGGGGGTGCGGGGAAGAGGGAAGGGGGTGTTTTAGGCAGGAAATATGCCTTTTCTGTTCATGCAGTGTCATAAAGTAGTAAGACCTGAGTGACCAGGCGACCAGTATGCAACGCATTCGAGgtgcaatgtttgttttatattccgTTTTCATAGGGCACCACTGGTCCGTCATCAGGAGCCATACATGTTCATTATTGACAGCAACCGCTACGAAATTACACTTGTGATTCTGAATGAGCGTGGTTATCATGCCTTCtgtgtcgttttgtttttttaatcagcgTTGGTTTTGTACTATAATCTGGACACAGTTCTGGGCTGGCCATTTTGTCTGGCTTGCTCATTTCCAGCCCCCACATCTTGGCTAGGCTTCCTCCTGTTCCATTTATTTcttttgattagattttttcaCAAGTTGCCTTAAATagcttgtattttaaaacctgGATTTCTCATTATTTGCTCATAAACCTGTTAATTTCACAGCATGCccagttacattaaaaaataaaaaaggaaaaaaaacttggcAGTTTCGGTTTCCACTAAATCTCAAATCTCTTATGCAAATGAAGGAATTGTTGTGCTCTGATTTGTTGGCTAAAATTCATTTTCCAATCTTGTCAAATGGAAAtgataatttgttttgcaaatgacCCCACAAGTATTGTGTTGAATTTATCTATACACATTACACTCAAATATGTTTATTGGGACTGGGGATGAGAGAAATATTGTTCTCTAATGATCTGGATGTCACAcatgagattttattttctcattaattttcttaattgacATCCCATGACATTTACAGTCTTAGTCAATAGCTGTGCTATAGTTTATTACCACCTCTAGGATTATAAGCACCCTCATAGCAGGTCAGTTAactttaatttatgttaatcttaaattaaatgtatagattaaaaaaaaagttcaaaataaagTCAACCACATCGAACGCATTTGTGATGAAATCTCAGAAGTGTGATGGCAGCCCCGATATAACCTTGTACCAGAAAAGCTGTTAAACTGGGGCTGGTGTAGTCTTGcatattaaatatgaacaaatagTCAAATAATCCATAGTTTTAAAGGACAGTCTTTAAAGCCTGAAGCTCATCTGCCTTTCTTTCACAGTGCTGCTGAGCAAAACAGTTATGCATATACAACCTTTTTTGCCAGTGCCAGAATTACTAGACACTCATTTATGAcagttatatattatttctcaGCATTAGGTTACAAAGATGGGATTTTTGTCTTTTCTGAGAAATATTTAATGTGGAAGTGCCCTGGAAACCTAATGTCCCCACATGTAcagcattcaaaataaaaggcATAACTACCATCACTCTGAGAGAACCAATTCCTCAACGGTGCGTCTACTTCTGTAGTGAAGATGTTATCATCAGAGTGAACAATATTCTCTTCCTCTGCGACTCTAGTGTCAAGATCACTAGACACCAACGTAGGGGATTTGAGCACATTATTCTAATTTGTGCAGTGAAAATATTTTGGCAAACACTAAGGTAGTACTATTGTGCACAATTCAGGTGTTTGGAACAACAGGACGACATTTGTCcgcaaaataattttatttatgatatAAGTGATCTGTAATGTctattcaaaaaataattgaaaaaggaGAAAGCCTACTCTGGTTCAGGTAGTGATATGTCAAAATAAGTATGTCAAATACTACATGATTGAAGTATTCATTTATGATATGCGGTGTGGTTTGTCccacaaaatgcttttttttttttttttttctccttttttttttttttt

Function


GO:

id name namespace
GO:0048514 blood vessel morphogenesis biological_process
GO:0000186 activation of MAPKK activity biological_process
GO:0005524 ATP binding molecular_function
GO:0004709 MAP kinase kinase kinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K04427 MAP3K7, TAK1; mitogen-activated protein kinase kinase kinase 7

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2504 lncRNA downstream 188211 12068049 ~ 12068258 (-) True G2079
TU2494 lncRNA downstream 204978 12051245 ~ 12051491 (-) True G2071
TU2489 lncRNA downstream 229311 12026919 ~ 12027158 (-) True G2066
TU2475 lncRNA downstream 350798 11858921 ~ 11905671 (-) True G2052
TU2458 lncRNA downstream 393368 11809819 ~ 11863101 (-) False G2044
TU2588 lncRNA upstream 104116 12387608 ~ 12387931 (-) True G2140
TU2590 lncRNA upstream 134436 12417928 ~ 12418336 (-) True G2142
TU2618 lncRNA upstream 586009 12869501 ~ 12869951 (-) True G2168
TU2653 lncRNA upstream 614939 12898431 ~ 12901945 (-) True G2196
TU2702 lncRNA upstream 748436 13031928 ~ 13032764 (-) True G2234
AMCG00003631 mRNA downstream 79837 12156367 ~ 12176632 (-) True AMCG00003631
AMCG00003629 mRNA downstream 125858 12079468 ~ 12130611 (-) True AMCG00003629
AMCG00003625 mRNA downstream 178337 12075319 ~ 12078132 (-) True AMCG00003625
AMCG00003626 mRNA downstream 279508 11958572 ~ 11976961 (-) True AMCG00003626
AMCG00003627 mRNA downstream 298815 11940494 ~ 11957654 (-) True AMCG00003627
AMCG00003638 mRNA upstream 299645 12583137 ~ 12595386 (-) True AMCG00003638
AMCG00003635 mRNA upstream 335294 12618786 ~ 12624689 (-) True AMCG00003635
AMCG00003636 mRNA upstream 552025 12835517 ~ 12855317 (-) True AMCG00003636
AMCG00003640 mRNA upstream 574784 12858276 ~ 12860667 (-) True AMCG00003640
AMCG00003637 mRNA upstream 579315 12862807 ~ 12865753 (-) True AMCG00003637
TU2508 other downstream 178317 12076038 ~ 12078152 (-) False AMCG00003625
TU2480 other downstream 316686 11923808 ~ 11939783 (-) True AMCG00003623
TU2225 other downstream 1151797 11103326 ~ 11104672 (-) False AMCG00003595
TU2164 other downstream 1300134 10951176 ~ 10956335 (-) False AMCG00003586
TU1027 other downstream 6900001 5345839 ~ 5356468 (-) True AMCG00003484
TU2704 other upstream 751461 13034953 ~ 13035489 (-) True G2236
TU2747 other upstream 820864 13104356 ~ 13111128 (-) False AMCG00003652
TU2876 other upstream 1725966 14009458 ~ 14013021 (-) True G2373
TU3027 other upstream 2527294 14810786 ~ 14811331 (-) True G2500
TU3242 other upstream 3232181 15515673 ~ 15591730 (-) True G2665

Expression Profile