RNA id: AMCG00003637


Basic Information

Item Value
RNA id AMCG00003637
length 1719
RNA type mRNA
GC content 0.54
exon number 5
gene id AMCG00003637
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 12862807 ~ 12865753 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAATGGACGAGGATTTTCTGCTGGCTCTCCAGCTCCAGGAGGAGTATAACCACGAAGCGTCCGGCTCCTGGGGGAATGGAGATGACGTGGGCAGGGAAAGCAAGAAGAGGAGAGTGGAGTCCAAGAGTGAGCTTGTTTCCTATCCCAGCACCCCTTTCCACCCAGAGAGACCGCTGTCCATCGTGGACGAGTcgtgggagattctggaccccAGCCCCGATGTCAGGGCCATGTTCCTGCAGTTCAACGACCTGTTCTTCTGGGGGAAACTGTCCGGAGTGGAAGTGAAGTGGAGCCCTCGCATGACACTGTGTGCTGGCGTGTGCTCCTACGAAGGCCGAGGAGGGCTGTGCTCCATCCGGCTCAGTGAACCGCTGCTCAAACTGAGACCCCGACGGGATCTGGTCCAGacaCTCTTACATGAGATGATCCATGCTTTGCTTTTTGTCACCCAAAACAACCGTGATCGGGATGGACACGGGCCAGAGTTCTGTAAGCACATGAACAGGATCAATGTGGCCAGTGGGACCAAAATTACTGTCTACCACAGCTTCCATGACGAAGTGGACCAGTACCGGCAGCACTGGTGGCGCTGCGGCGGGCCCTGTCAGACTCGCCGACCCTTCTTTGGGTATGTGAAGCGAGCCATGAACCGGGCCCCCTCTGCCCAGGACCCCTGGTGGGCAGAACACCAGCGCACCTGTGGGGGCACCTACATCAAGATCAAAGAGCCTGAAGACTATGGAAAGAAGGGCAAGAAAGGGGAAAAGGGCAAGAAGTCTGGGACACAGACTGCTCAAAAGGACAAAAGCTCTGGGACTCAGCCAGCTGAAAAGGAGAAAAGTGCTGGGAGGCAGACCGCTGTGAAAGGCAAATCTTCCAGCACTGCCACAGGGGCCAACATGGGTTTACCAGAACGGCCAGGTCAGAAAAGCCCTTTTAGAAGCAGCAGCACTGCCAGTGTAGTCCCAAATTCAGGCCCATTCCCTGCAAAACAAGCTCCAGTGGGTAAACGATCTGTTGGAAACACCAGGGTTTTTATCAGTGTTAATGGATCCCCTGTCAGGATTTCAACGACCAATGGCCAGCTGAAAAGGCCTCCCCATAATCCTTCACATCTTGCTGGGGCCAGGCAGAGGTCTGTCCAGGATCTCTTCAGTGCAAAAGGGCTCAAATCTCCAGAAAGGCCTGGTGTGAGTGCCAGCATCGCAGCCCCTCCACAACCACGAGGGTCCGGAACCCAGGGCCAATCTAATGAGACCAAAAAAGGAAGTTCCTTTATGAACGGATTGTCTTCAATAGACCTCACGCAGCAAGAGAGAGGGGCCAGTGGAAGTGCCAAAGATATGAAAAAGGACAATCCCCAAAACCAAGGCCACCCCAGAGAGAAGGACGCAGATGCTTTTGAACCTCTCAATTCCAAGTACTTTAAATCACCGGAAAAGGCAGCAGGGGGCCTCCCCAACTCCAGGAAAAGACCCAGACATGAAGGGGGCTCTATGCAcatttttgatttcttccagaAGACAACAAAAGAGTGGGACAAGCCGTCAACACCAAAGACTTCGAGTGGGGGAACCACAGCCAGCACTTCTGCTCCCCCTGTACAGCCTGGCCCTCTCAGCTCCGCCAGCCTTACCGTCAGTTGTCCGGTGTGCCACACCAGGGTTTTAGAGTCCAAAATCAATGAGCATTTGGATACCTGTCTCGTATGA

Function

GO: NA

KEGG:

id description
K24051 SPRTN; SprT-like domain-contaning protein Spartan

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2590 lncRNA downstream 444471 12417928 ~ 12418336 (-) True G2142
TU2588 lncRNA downstream 474876 12387608 ~ 12387931 (-) True G2140
TU2504 lncRNA downstream 794549 12068049 ~ 12068258 (-) True G2079
TU2494 lncRNA downstream 811316 12051245 ~ 12051491 (-) True G2071
TU2489 lncRNA downstream 835649 12026919 ~ 12027158 (-) True G2066
TU2618 lncRNA upstream 3748 12869501 ~ 12869951 (-) True G2168
TU2653 lncRNA upstream 32678 12898431 ~ 12901945 (-) True G2196
TU2702 lncRNA upstream 166175 13031928 ~ 13032764 (-) True G2234
TU2703 lncRNA upstream 167486 13033239 ~ 13034060 (-) True G2235
TU2732 lncRNA upstream 206043 13071796 ~ 13081944 (-) False AMCG00003652
AMCG00003640 mRNA downstream 2140 12858276 ~ 12860667 (-) True AMCG00003640
AMCG00003636 mRNA downstream 7490 12835517 ~ 12855317 (-) True AMCG00003636
AMCG00003635 mRNA downstream 238118 12618786 ~ 12624689 (-) True AMCG00003635
AMCG00003638 mRNA downstream 267421 12583137 ~ 12595386 (-) True AMCG00003638
AMCG00003632 mRNA downstream 579315 12256469 ~ 12283492 (-) True AMCG00003632
AMCG00003644 mRNA upstream 17714 12883467 ~ 12891135 (-) True AMCG00003644
AMCG00003646 mRNA upstream 39619 12905372 ~ 12906889 (-) True AMCG00003646
AMCG00003645 mRNA upstream 60942 12926695 ~ 12968156 (-) True AMCG00003645
AMCG00003650 mRNA upstream 171939 13037692 ~ 13050392 (-) True AMCG00003650
AMCG00003651 mRNA upstream 190241 13055994 ~ 13065554 (-) True AMCG00003651
TU2508 other downstream 784655 12076038 ~ 12078152 (-) False AMCG00003625
TU2480 other downstream 923024 11923808 ~ 11939783 (-) True AMCG00003623
TU2225 other downstream 1758135 11103326 ~ 11104672 (-) False AMCG00003595
TU2164 other downstream 1906472 10951176 ~ 10956335 (-) False AMCG00003586
TU1027 other downstream 7506339 5345839 ~ 5356468 (-) True AMCG00003484
TU2704 other upstream 169200 13034953 ~ 13035489 (-) True G2236
TU2747 other upstream 238603 13104356 ~ 13111128 (-) False AMCG00003652
TU2876 other upstream 1143705 14009458 ~ 14013021 (-) True G2373
TU3027 other upstream 1945033 14810786 ~ 14811331 (-) True G2500
TU3242 other upstream 2649920 15515673 ~ 15591730 (-) True G2665

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035270 True 5983 mRNA 0.41 5 NC_007131.7 4033193 ~ 4049862 (-)