RNA id: AMCG00003642


Basic Information

Item Value
RNA id AMCG00003642
length 5468
RNA type mRNA
GC content 0.44
exon number 14
gene id AMCG00003642
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 12891168 ~ 12901958 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCTCTGTCTGCTGGTTGGACTGGATGTGGAGGTGAAGGTGTTTCTGCTTTGagattatttaaagtttttttctctctctgctgtccaACCAAGGCTTGGCCTTATTCTGCTGCAGCCCGTCCGCTCATGCCTGTTATCTGCTGTAATAGTTCCTGGTTGTAAGGAATGGCATCCAAAAACTTGTATTCGCACCAGGATCCATCATTAAAGAAGAGAGATGACTTTGAGGATATCTTGGAAGAACGAAAGAACACGAGTGACGTGagatttgctttgaaatgttataCCCCCGTGCTGTACAAGGGAGTGGCCCCTTGCAAAGCCAGCCAGCTCAAAGCCAAAGTGCTCCAGTCCGCTCATCTTCAGTATGTTATCAAGCAGATGTCACAAGATACAGGGGAGTCCCCAGAGATCATCCAGGAGGAGGCGGCTGTGATCCTGGAGGAGATGGCCCACCGCCTCCAGCTCAGCGTCGTCCGTTTCTTCGCCTTCACGCTCAGCAAGGTCTTCAAGACGCTCTTCCAAAGAGTCCGAGTCAATGAGGAAGGGATCCAGAGACTTCAACAGGCTCTTCAAGAGCATCCTGTGGTGCTGCTCCCCAGTCATCGTAGTTATATTGACTTTCTTATGCTGTCCTACATCCTCTACACATACGATCTCTCCCTGCCTGTCATCGCTGCTGGAATGGATTTCCTGGGCATGAAGTTTATTGGCGAGATGCTACGAATGTCTGGAGCGTTCTTCATCCGCCGCTCATTTGGAGGCGACAAACTATACTGGGCTGTGTTCTCTGAATATGTCAAGACAACCCTAAAGACTGGCCACACTCCTGTGGAGTTCTTTTTGGAAGGGACTAGAAGCCGTACAGGCAAGACCCTGACTCCCAAATTAGGATTGTTGAATATCGTGATGGAGCCATTTTTTAAGGGGGAGGTGTTTGACATCAGTCTTGTTCCCATCAGCATCAGCTACGAGAGGGTGCTGGAAGAGGCACTGTACGCTCGTGAGCTTCTGGGAGTGCCCAAACCCAAAGAAACCACCTCGGGACTGATTAAAGCCAGGAAAATACTCAGTGAAGATTATGGAAGCATACACGTATACTTTGGGCAACCGGTGTCAATCCGAAGCTTGGCGCAGGGACAGATCAGCCGGTCCCAGTACAACTTGGTCCCCAGACATATCCCTAGGAAGCCTGGTGAGGACACCCAAGCCTTCGTCAACAACACGGCCTACAGAATAGAGCGCCTGCAGGAGGACAACATGGTTCTCCGGCCCTGGGTCCTGATCGCTACCATTCTCATGCAAAACCTGGAGGGGATAGACTTTGCGATCCTGACAGAGAAAACCGCCTGGCTGAGGGGGCTGGCACAGTCTTTTGGGGCCTTCCTGGACTGGCCTGaACACGAGAGCACCGGTAAGGTGGTGTCCTCCAGCGTGGCCCTGCATCACGACATTGTGGGCTGCGTCGGGGACCGTGTGGTGCTACTGGAGGGGTCGCAGGAGGCCGTCAGCCCAGAGGAGGCGGTCTTCACACGCGCCGTCACTGTGCTCATGTGCGCCTCCTACCGGAACCAAGTCATGCACATGTTCATACGGCCGGCGCTGGTGGCTGTGGCGCTGCACGCCGCGGGCAGCTCCAGAAAAGGTAACCGCTTCCACCGAGCACAGCATCCATTGGTGTGTCAGTACCTGAGCGAGGAGGTCGTCGAGGGTCTCAATGAGAAGCAGTACGTCCCAGCCGTCCGGAGCTTCGCTGTCAAACGCCTTCTAACAGGATGTCTCCAGTGCTATGAAGTGCTTTCCTCTGACATGCAGAAGAATGCGTTGAATGCTTTGCTCAGATTGAACGTGTTGCGAAAATCCAAGATAGCTGATCAAGTTACTATTAAAGTGAACAAGATGGCAGTGAACCAATTAGAAGACACACTAGGAGGCAAAATCCCAATCCGGAAAACAGTCCTTGCTCGACTGTAGTCTGAGTGCCATGTTTCAGAGAGGTACAGCTGCAGGGAGTGACTATTGCCTTCATTATTCATTACCACAATGCCAAATTAGCAAAGACATTTGCAGCAGGATCAAGAAAAaggccttttaaaaaaaaaaaaaaaaaaaagagactttGTAGACTGCCAGTGTGACAGCTTTATGGTTGAAACCACTAAAGTTGTTCACACAATTTCTTACAATTGAAAATCCTTTTAAGAGGTAAAGAGGTCTGCTATCAACTTACTCACCTGTATGTCTGTTTCTCtttagtttaatgtttttttttagtgttgCCAAACCTATTTTAATCATTGTTAACACACATTTAAGTTGTGACAAGTCTTGTGGACTCCcaagaacaaagaacaaaggTCAGGAACAACTGAGGACACAGTTCAGGAGGACCAGTTAGGCGCCTTATTCAAACATTTGGGGTGTAATTCTGGATTTTAGTTCTCGTTGTTGTCTGTCTTATCTATTGAAGAGTATTTCTGTGTTAAACCATTCAGCAAGGATCTCGGCTTGTTCCCTTGTAAATAAGGGAAGAGAAGAtgtcttttaattaatattctgtcaattatagtaataatgtattgactataatatatttatacatacttatacacacacatgtatgtatctatatatattgtgacacagaGCAGGGTGTGGGACCTGGGTTGTATGTCTCGGATGACATGACAAAGGCTGTGGAAACAACAGGAAATCCTAGTCCAAGTCTGGGCAATAGCTAACACTGTAAGCAAATCCCTAGCGATGCTCAGGCCACTTCTCGGTCCCCCAATCAAAACCGTCAGGTAATGCTTGCAGTTGTTAAGCAGCCTCATAGTCATTGTGGGAAAGCAGGAGTCAAAGGTCATAATCAGAGTCATAGTGTAGTCCAGGTCAAATCCCAAAGGAAGGTATAGCACAGACTGGTTGTTATGCAGTTAGCAGGTCAGAGTCGCACGGGTTCGCACGGGTTCCTCCTCTTGCAGCTCGGAAGTTCTCCTAAACGccctccttttttccccctcaggtACAGCTGGAGAGCTGCCGCTTTATAGGGCTCCATTCATTAGTGCCTGTAGGTGTGTCTCTTTTCCCACGCTGTCAGGTGTGTGAGTGACAGATCCCAGTACACCTAAACTGGTTACTGTACAAGAGCTCCAGGAGGGGGGAGACATTTCTTCTTTGTATATCTTATCGCCTGTACGAAACCATCACTGTGTCACAATATGTAATCCAATAACTTCCAAGTCTGAAAGTCAGACAAACACGCACAAACAggatatttttcaaaaaatgtatagtCTTTATTAATGCATAGAGGTTCAGAGAAAAATTTTAATGTAAGAGTGTGCAGCAATCCACTGGTTTTGTCAGTCTTTGGCCCTCACCAGGTTTGCTAAAAATTCTTCTGCTACTGTTTTTCTGTGAACCTCCACCTAAATATTAATACAGACTGTTGTTTctgtggatggatggatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataattatgaatatgtatatgtgcatattCAGATTTAAATCATGTAGTCTTTAATGGTTGACTTGTagaactgtaaaaacaaaaaggttctATGATTTATAGTTTGAATTTCACGTCCCCAGTCCTGGTCCTGAAATGTTTCAGTATCTTCAAGGTGTCATTCAACCTGGGCTCCTAAGTACCTAATTTAActcaatattgtattaattgaacGAGGCTGCTTTTCCCAAAAATCTTTTGCACTGCAGCCCTCTGGGTCCAGGATTGGGGACCCTTTCGTCTATACCGTTTACATCTATAATCGATAATGAGAGGAGTCCGAGCCTTACTGTATGGATGGCACATCATTGCCAGCTTTGACAGGGATTCCCCCTGGGAGTAGCTGTGTTCAGAGTCAGACAGGGTTTCCTTGGTGTGCCACACACAGGGACTCTCTGGCTCATTGGAAACCTGCATTTCTGTCTGCAGTGTTAGTAGTGAGAGCTGTTAGTTCTGTCTGTGGTGTTAGAGCTCTGTTGGTTGTGATTTATGGAAATAAGCTAGTGGATTGACAGCACAGGATGTGTGTCAGCCTGCCTGTCAAGAGTTCTTGTAGATACTAGGTTGggtttttatatattacaacaTTACTTTGGTGATGTACATTATAATTAGGGAcgtttgttttatgtgtttttcagtCAAGGCAAAACGCAAGCCcctaatttgatttaatatcatTTTGAAAGCAATACAAGACGGTGGATTGAAAGGTTAGATTTATGGATTCTTAGaagattgtgtttttaaagtgctCATTCTGACCTACAAGTTTATGGCCAATGTGCCAAGCACCTAAAAGCATACATGCACTTTATATACTGAAAAGACTTCAGAAAGACAGAAATCTGGATCCTCCATCATGGAGTCCTCAACACAGGTCTTCAACGCCAATATGATATCAAGATCCGCACTCTCTCCACACATCTGTAACCAGACTAAATCTTGCCACCATTAGCAGTTCCTTCCACCATTAATGTTTGTCTGAAGTCGAACCGTTTGTTGCTAGACtcctgaaaaacacacattatgcTAGTTTACTGCTGCTACATAAACAGTGATCTCATTCTTTGCATTGTGCTGTGAGTCCTCCCCCTCACAGTGTAGGAAGGGTCTTTGTGTTTTCTACACTGCTGCACGGATTACAGCAGTCAGTCAATAGTAATTGCTATTCCAACTGCATGGGGAGAAATAAtctggttttaaattaatatataattttgtttacaaaacaaaatctgtatgAAAATCAGATCCCCAGGATTTCAATTTAGTATGCTAAATATATTAGCAGAAAAGTCCATCTGTAATATTCAAGTAGACCTTGTGCACACTGAaggatatataatatatacattatatatgtccTGTTGGTTTTAAAAAAGCTTCTAGGACCCAGACCCAGACCCATGGGTCTTCCCTTGCAAACGAaagaaggagattgagctgAATGAATTTGACTCacaggataaaaacaaacaagcttcAAGACGGTTTCGCCAGGCTGGTTGAAGGAACGGCTTGTTTATGTTTCAATGATCAATCTTTTATATGTGAAAGACAGGTCAAAAACCTCTGCTTTGCCGCCTTCCctgaataaaatactatttatttctcAACATCTTACTGaacataatgcattattttattttttgaagtttAAACACTTGAGGAAATTTCATAATGAAAGTTTCTGCAACactgtaataaatgtatagtttttgttgttttgttatataattGATTTGGTCAGTACCACTGTCCATTCTGCTCATGTTTTGCAGATAGCAAACTTTCTAGCCACACTTTGATTCTTGGATGTGGTCATTTTTCATGTAATGGAGTGTGTGattgtttcttcttttaataataaaaatactgatGAAAGGCTTTTACTAA

Function

GO: NA

KEGG:

id description
K00649 GNPAT; glyceronephosphate O-acyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2587 lncRNA upstream 503110 12387603 ~ 12388058 (+) True G2139
TU2565 lncRNA upstream 631525 12220322 ~ 12259643 (+) True G2125
TU2511 lncRNA upstream 802182 12087537 ~ 12088986 (+) True G2086
TU2454 lncRNA upstream 862975 12026126 ~ 12028193 (+) True G2042
TU2434 lncRNA upstream 984980 11905983 ~ 11906188 (+) True G2027
TU2631 lncRNA downstream 677 12902635 ~ 12903622 (+) False AMCG00003643
TU2723 lncRNA downstream 172730 13074688 ~ 13080021 (+) True G2250
TU2742 lncRNA downstream 196603 13098561 ~ 13101316 (+) True G2264
TU2745 lncRNA downstream 200499 13102457 ~ 13102666 (+) True G2267
TU2760 lncRNA downstream 325277 13227235 ~ 13228357 (+) True G2281
AMCG00003633 mRNA upstream 10811 12872513 ~ 12880357 (+) True AMCG00003633
AMCG00003639 mRNA upstream 22697 12866417 ~ 12868471 (+) True AMCG00003639
AMCG00003634 mRNA upstream 36466 12850133 ~ 12854702 (+) True AMCG00003634
AMCG00003630 mRNA upstream 742269 12147640 ~ 12148899 (+) True AMCG00003630
AMCG00003628 mRNA upstream 746240 12132846 ~ 12144928 (+) True AMCG00003628
AMCG00003643 mRNA downstream 608 12902566 ~ 12917002 (+) True AMCG00003643
AMCG00003641 mRNA downstream 16879 12918837 ~ 12926056 (+) True AMCG00003641
AMCG00003649 mRNA downstream 118419 13020377 ~ 13024239 (+) True AMCG00003649
AMCG00003648 mRNA downstream 123611 13025569 ~ 13037598 (+) False AMCG00003648
AMCG00003647 mRNA downstream 151471 13053429 ~ 13055181 (+) True AMCG00003647
TU2385 other upstream 1313839 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 1399725 11490185 ~ 11491443 (+) False AMCG00003606
TU1883 other upstream 3110266 9777508 ~ 9780902 (+) True AMCG00003570
TU1763 other upstream 3627700 9255828 ~ 9263468 (+) True AMCG00003551
TU1569 other upstream 4238764 8649125 ~ 8652404 (+) True AMCG00003534
TU2685 other downstream 135479 13037437 ~ 13042597 (+) True AMCG00003648
TU2754 other downstream 253102 13155060 ~ 13156627 (+) False AMCG00003655
TU2954 other downstream 1516558 14418516 ~ 14419732 (+) True G2440
TU3283 other downstream 3133705 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 4779859 17681817 ~ 17683988 (+) True G3047

Expression Profile