RNA id: AMCG00003644


Basic Information

Item Value
RNA id AMCG00003644
length 1791
RNA type mRNA
GC content 0.41
exon number 7
gene id AMCG00003644
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 12883467 ~ 12891135 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGACGGTGGGCGAAAGGAGACAAACCAGTTCAAACGTCCGGTTTGCACCACGTGAAAAGAAGAGCGCCTTTAACATGGTGCcgttcatgcacacacacacccgaatagtgcttttcattctttactgaaaatgaaaaccaaatcaaaagtgAGCCGAAACATAAACGAAGAGGAAGGCGAGGAGATAGGCCTAGATCCCCGTTTTCTCGACAACGTTTTAGATGAGCTTTATGATTTCGGTGCAGACACagtgaagaaaaggaaaaataaatcccaaaagaaaaaggcaaagaagTGTTCGGAGGAAGATCAAGGTAAAGTTGGGCTCCTCACTGCTGGTATAGATGATGGGGTTGAGAAGAGAGCTCAGGATGGCCACTGTCCCTCTGAACAGAGGAAGGAGGCTGTGGACTCGGGCACCAGCACTGAAAGTCCAGCGGCCCACTCAACAGAAACAACATCACGGGTGGAAGTCGTGACATTTCAAGATCCTTctaagaagaagagaaaaatggTGGAAGCCCCGGCCCCTAGCCTAAAGtTGTCACACACTTCTGTTCAGGTACCTGAAATAAAGGAGAAAacgaaaacaaatacaactgaTTTTAGCCTGGAGAAGGCCCGGTTGGAGGTTCACAGATTCGGCATCACAGGATACCAGAAGGAGCAACAGAGAGTGTTTGAGCAGGAGAGAGCCATCATGCTTGGAGCAAAGCCACCAAAAAAGGAGTATGTCAATTACAAAGTGTACCAACAAATGATCAAGGAGaagaaactgaaagcaaaagAGGACGTGAAAGCGGGCactaacaaaaagaaaagaagagagcACGAAGGAAGAGCTAATAAGAAGTCGTCGTCAAGTGTCTTACCAGCTGGGCAAGTCGGACGCTTTAAAAACGGGGCGTTGGTTCTCAGCTCTAAAGAAATAGAGATGATTAAAACATCCAGAGTGATTAAGTAAGGAGTCAAGGTGTAGATCCGTATtgttgtcagttttgttttttattttgggggaatGGATTGATCACTGATATTTTCTGAGTACCTTATTCACGACTGTAATGATTATGTATTGAACACTGATTACTGGTGTCTATCAGAGGCAGTGGTCACTTGGCATTGTCTGGACACTATGGGTTGCTttcagacccagattagcaagAGCCTTCAACATTACAGTGTTATTATGTAGAGTGGTATGAGACTAGTGCTACTCCAGGCTTCATAGGTGTCTTCAGATACTGGGTAAAGATTATATTGAATAGCTAAACCAATAATGAGTTAAGTGACTGAAAATTTGAAATTAACAAAAGATCCTGGAGATCCCTGTAGTGTATCATCCTTCAGCCCTGGAATAACATCTGAAAGGTGTTAACTGTAGGGCAATTCTTACACCCGGATTAATATCCCTGTACAAAAAAGTTTTGGCAGTTTTACATTCGCTGTACTACTAATATAATACTACCACCTACTGGACAGGCTCTGAAATTGCACAAAGAGATGTCCAGGACAGTGAACAATTCCTTCCCTGCCATCAGTTGCTCACagtgatgtatttgtttatttaatggacTTCTGCTGTTTTTACCCagaactgtaataataaaaaaaaatacattcattgtaaaataaattgtgtatatttccataaaattctgttttataattacaacaaaatacacCTGAGTTTTAATAGTGCTACAAcaatgtaagtaaataaatggaaTACCCATACATTTAACAGGCGGTTCTGCAAGTGTTGTGTTCGGACTCCatataaaccatttt

Function

GO:

id name namespace
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0004164 diphthine synthase activity molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2618 lncRNA downstream 13516 12869501 ~ 12869951 (-) True G2168
TU2590 lncRNA downstream 465131 12417928 ~ 12418336 (-) True G2142
TU2588 lncRNA downstream 495536 12387608 ~ 12387931 (-) True G2140
TU2504 lncRNA downstream 815209 12068049 ~ 12068258 (-) True G2079
TU2494 lncRNA downstream 831976 12051245 ~ 12051491 (-) True G2071
TU2653 lncRNA upstream 7296 12898431 ~ 12901945 (-) True G2196
TU2702 lncRNA upstream 140793 13031928 ~ 13032764 (-) True G2234
TU2703 lncRNA upstream 142104 13033239 ~ 13034060 (-) True G2235
TU2732 lncRNA upstream 180661 13071796 ~ 13081944 (-) False AMCG00003652
TU2733 lncRNA upstream 180661 13071796 ~ 13081944 (-) False AMCG00003652
AMCG00003637 mRNA downstream 17714 12862807 ~ 12865753 (-) True AMCG00003637
AMCG00003640 mRNA downstream 22800 12858276 ~ 12860667 (-) True AMCG00003640
AMCG00003636 mRNA downstream 28150 12835517 ~ 12855317 (-) True AMCG00003636
AMCG00003635 mRNA downstream 258778 12618786 ~ 12624689 (-) True AMCG00003635
AMCG00003638 mRNA downstream 288081 12583137 ~ 12595386 (-) True AMCG00003638
AMCG00003646 mRNA upstream 14237 12905372 ~ 12906889 (-) True AMCG00003646
AMCG00003645 mRNA upstream 35560 12926695 ~ 12968156 (-) True AMCG00003645
AMCG00003650 mRNA upstream 146557 13037692 ~ 13050392 (-) True AMCG00003650
AMCG00003651 mRNA upstream 164859 13055994 ~ 13065554 (-) True AMCG00003651
AMCG00003652 mRNA upstream 189057 13080192 ~ 13116660 (-) True AMCG00003652
TU2508 other downstream 805315 12076038 ~ 12078152 (-) False AMCG00003625
TU2480 other downstream 943684 11923808 ~ 11939783 (-) True AMCG00003623
TU2225 other downstream 1778795 11103326 ~ 11104672 (-) False AMCG00003595
TU2164 other downstream 1927132 10951176 ~ 10956335 (-) False AMCG00003586
TU1027 other downstream 7526999 5345839 ~ 5356468 (-) True AMCG00003484
TU2704 other upstream 143818 13034953 ~ 13035489 (-) True G2236
TU2747 other upstream 213221 13104356 ~ 13111128 (-) False AMCG00003652
TU2876 other upstream 1118323 14009458 ~ 14013021 (-) True G2373
TU3027 other upstream 1919651 14810786 ~ 14811331 (-) True G2500
TU3242 other upstream 2624538 15515673 ~ 15591730 (-) True G2665

Expression Profile