RNA id: AMCG00003646


Basic Information

Item Value
RNA id AMCG00003646
length 1122
RNA type mRNA
GC content 0.53
exon number 5
gene id AMCG00003646
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 12905372 ~ 12906889 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATCTCTTTGCAGCTGCCTGGACCGCAAGCTCCCTGACCAATGTGTACAGCACTGGTGAGCTCCTCCACTTCCAGGCCAGGGGGTATCCAAAAGCTGAAGGAGAGCAGCTGTTCATTGGCTCCTGTTATGCAACACTGTCTGAATACCCTCAATCATTCCCCAAGTACATGATCATCGACCACTATGGCTGCATGAACCACAAGCTGGGAGCCAGTTCCAAGTTTCATCCACCCAGAGCAGATGGTGTCATCAACTTTGCTGTTGATGCAAGGGAGCTCAATCTTGTGTCCAAGATCTATATCCACTGTGTCCTGTTCCTCGGCATCCAGGGAACAACATTGCATACAAAATCTTGCAACTTTGACACCACAAAGCAAAGATGGGAAGCCCTTGAGCTTGTGGATGGTGTCTGTGACTGCTGTGACTCCAACTGTACTGCCCCACTCCTGACCTCCGTAACTACAGATCTTTGGAGCACTGGCCCCATATTGATCAAGGAAGGCACTGCAAGGAGGACTGCTTCTGCCAGGGATGGTGACCTCCTCTGGTTTCAGGTTAAAGGAGGTGATGCCTACCAGCAGGATGAGTATAATGGGGCCTATGAGGAGGAAGATGAGAATGACCATGACAGTGAATTTGGCAAGGATTATGAGGAGGAGGATGGTGCAGGGTGGGATGAAGCGCGAAggccggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggatgatgatgatgatgatgaagaccATGGAGTGGGGTGGGATGAAGAGCAAAGGCCAGATGAGGAGGGGCAGCATGAAGAGGATGAAGAGCAAAGACTGGATGAAGAGAACAGCGCAAGGTGGGatgatgaggaagaggaggggtgGCAGGCTGATGAGGATGAATCTGCTGATGAACCAGTGGCAGACTCCCTGGATGAGGCCATTGACCACCCGTTCTCCAATGATGCAAGCCTGGTGGATAATCCAAGGGAAGCATCTGGTACCAAGGTCTCCATGCTGGAAGTGGCTGAGACTGAAGCTCCCTCATTGGAGCTGGAGGGTTCTACA

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2653 lncRNA downstream 3427 12898431 ~ 12901945 (-) True G2196
TU2618 lncRNA downstream 35421 12869501 ~ 12869951 (-) True G2168
TU2590 lncRNA downstream 487036 12417928 ~ 12418336 (-) True G2142
TU2588 lncRNA downstream 517441 12387608 ~ 12387931 (-) True G2140
TU2504 lncRNA downstream 837114 12068049 ~ 12068258 (-) True G2079
TU2702 lncRNA upstream 125039 13031928 ~ 13032764 (-) True G2234
TU2703 lncRNA upstream 126350 13033239 ~ 13034060 (-) True G2235
TU2732 lncRNA upstream 164907 13071796 ~ 13081944 (-) False AMCG00003652
TU2733 lncRNA upstream 164907 13071796 ~ 13081944 (-) False AMCG00003652
TU2734 lncRNA upstream 170759 13077648 ~ 13080021 (-) True G2257
AMCG00003644 mRNA downstream 14237 12883467 ~ 12891135 (-) True AMCG00003644
AMCG00003637 mRNA downstream 39619 12862807 ~ 12865753 (-) True AMCG00003637
AMCG00003640 mRNA downstream 44705 12858276 ~ 12860667 (-) True AMCG00003640
AMCG00003636 mRNA downstream 50055 12835517 ~ 12855317 (-) True AMCG00003636
AMCG00003635 mRNA downstream 280683 12618786 ~ 12624689 (-) True AMCG00003635
AMCG00003645 mRNA upstream 19806 12926695 ~ 12968156 (-) True AMCG00003645
AMCG00003650 mRNA upstream 130803 13037692 ~ 13050392 (-) True AMCG00003650
AMCG00003651 mRNA upstream 149105 13055994 ~ 13065554 (-) True AMCG00003651
AMCG00003652 mRNA upstream 173303 13080192 ~ 13116660 (-) True AMCG00003652
AMCG00003662 mRNA upstream 210477 13117366 ~ 13212180 (-) True AMCG00003662
TU2508 other downstream 827220 12076038 ~ 12078152 (-) False AMCG00003625
TU2480 other downstream 965589 11923808 ~ 11939783 (-) True AMCG00003623
TU2225 other downstream 1800700 11103326 ~ 11104672 (-) False AMCG00003595
TU2164 other downstream 1949037 10951176 ~ 10956335 (-) False AMCG00003586
TU1027 other downstream 7548904 5345839 ~ 5356468 (-) True AMCG00003484
TU2704 other upstream 128064 13034953 ~ 13035489 (-) True G2236
TU2747 other upstream 197467 13104356 ~ 13111128 (-) False AMCG00003652
TU2876 other upstream 1102569 14009458 ~ 14013021 (-) True G2373
TU3027 other upstream 1903897 14810786 ~ 14811331 (-) True G2500
TU3242 other upstream 2608784 15515673 ~ 15591730 (-) True G2665

Expression Profile