RNA id: AMCG00003648


Basic Information

Item Value
RNA id AMCG00003648
length 4139
RNA type mRNA
GC content 0.50
exon number 21
gene id AMCG00003648
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13025569 ~ 13042597 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGGTGTTAGAACGGGCGGTGCTGCGCCTGCGCGTCTGGCTCTCTTGGTGACGGCGGTGTAAACACGCCGCTGTTAGTTTTGCGGAGACGTGCGCTGCCTGCCGAGGTCCAGTGCCCGGATCCCAGGAAGGACACAGCCAGCGTTTCAAGCGAGATCGCCTTGAAACATGAAACCTCTGGAAGCCGACTCCATGCCGAGCGCCATGCTGAAGTCCAAGATGAGGTCCAGTGCCCACAGTGTGAAGCAATGGCAACTAGCCAGCATTGGCTTTAACCCGCCAGTGGACGAGAAAGCACTGGTCACCACAGAGACCAAGTTCAGCACCTGGACCCCCGTTATCAACAAGACCTCCAACCAGCAGCTTTTCCAGGAGAGGAACAATCTCATTCTTCACTGGTTTGACCTTTGGACTGACAAGCAGAGAAAGCAGTTCATTCATAACGTGCTGATGAGGTGCTCCAGATCCCAACTCAAGTTCACTCGGGACTGGTTCGAAGAGGTCGTTCCTGTCACCAAGCTGGACTTCACTACCGTCCTGCCGCGCATCCTGTCCCTGTACATCCTCTCCTTCCTCAGCCCTCAGGAACTGTGCATGGCGGCCCAGGTCAATTGGCACTGGAAGTTCCTGGCCGAGCAGGACTGCTTGTGGATTCCCAAATGTGTCAAGCGTGGCTGGTTCCTCCCCTATAGCCCCGCAGACAATGAATATGggtcctggaagagacactatGTGGCCTGTGCCAAAGACTTAGACTACCTGACACCACGAGAGGCTGCAGATATGTACGGGACTCTGAATGAGCCGAAGACAGATACAGAGGATCAGGAGGAAAGGTTGAGAGAGCGCTTGATAAGAAAAAGAATATGGGAGAAGGTTGCAGAACACAAAAAAGCTTCACTAACATCAAGACCGCCTTGGCTGAGCAACAGCTGGACTCTAGGGTCACTGAAGAGCAAAGGTCACAATGAGAAGCTTCGGGCGAGTCTGGGCCAGCAGGGTTTGACAGCGGCTTTGGTGCTCATAGGGAACCAGACCCGCTCTCagcactctctctcccagctcCTCCGGCAGGACACACAGAGCCACTTGACACAAGACACTGCCCTGGAGAGGAAGATGATGACCATGTCGATGCAGTCGCTGCCCAAACAgATGAATCTGAGCAGTGGCAGTAGCAATTCTGTATCATTCCCCAAGGCAAGCCCGAGTCAGTCTTCTCCCCGTCTCCTGCTGGTGTCTTCCAGGATACCAGGATACGAGATGCTGTTGTGCAGTGCATGGGTGGATGTCATACCAGTGCTTTATGATTACTATGGAACCACACTGGAAGCCCTGCTGTACCGGGTGGAGCAGGTCCTGCATGGCCAAAGAGCCTGCAGCGTTGGTGTCTTCACGGAGGGACACCCAGGGGAGATTGCGCTTTTGAAAGGCTGCACAGTCAGTCAAAGGACAGTCCTGCACCCCGAGGTGAGACAGTTCTGGGAGAATCTGTCTGGTTTTGTGGTGTCCCGGACGGACGGAGGCAGCCTAGACATATTCTTTCCTCTGGCAGTTTCAGAGACAGGAATGGAGCTGATCTCCAATATTTCGGTTCTGACAGGACTCGATGTGAGTGCTCCTACTGGAGTTGGCACTGGATCTCACCAGCACATTCTCAGCGAGTGGCTCGGCCGAGCGGTGAGCCCCAGCGCCACGTATTTCAGCGCCCCGGCCCTGCTGTGCTGGTGCAGGCAGGCGGAGAGACTGGAGGAGGTTCTGCTGGATCTTCGCAAACAGATGGGACCTCAGCTTGGTGACCTGCGGACGGAAGTGTGCGGAAGAGTCCTggGTCAGTTCCTTTTTGATTCCGTGGGCTTGTCAGAGATTCACACGAATGTGGAGATCGCTCGAGCTGTAGCTGAAGGACTGGCTGCGCTGTCCAAAGAAAACTGTGAGAATCCACTGGAATTTCTTTCTGACTTCCTGCGGAGAGGTGTCAGTCACACGTCCCAAACTGCTACTGCTTTTCTGACTGAGTGTGTTCCTAAAGGAGCCCCCCTCGAACCCCCCGAGACAGCGACGTTGCCAGTGGGCTCTGTGGACCGGCGCACCATGTTTGCCAGGGAGTTGTTTCACAGCGAGAAACGCTACGTCCAGTTGCTGGATGCCGTCAGACTCGTATACGTCACTCCACTCAGAGCCGCTTTATCGTCAAACCGCGCCATCCTGAGCTCTGCCAATGTCCTCATCATCTTCTCTGACATCCTAGACGTCGCGGAGCTCAACAGACAGTTCCTGGACGAGCTGGCAGAGCGGATACAGGAGTGGGGTCCCTCCCAGTGCATCGGGGACGTGTGCGTCAAATTCAGCACCCGACTGAGGGCCTACACTAACTTCTTCAATAACTACACCACCATCCTCAGGACTATTGACAAGTGCAGAGAGATGGTTCCTGCCTTCCGTGCTTTCCTGAAGAGACATGATAAAACCATGGCCACGGAAATAATGAGCTTGCaggacctgctgctgctgcccccccaGCGCTTCGAGGAGTACGTGACTCTCCTGCAAGCGCTCTCCCTGCACACGGCCCCCGAGCACCCCGACCGTGCTCACCTCCGCACCGCGCTAGACACCCTCACACGCTACCGGGACTTTGTTCAACAGCTCAAACAGACCACAGATGGAGATTCGAAGATGTTGGAGACCCAGAAGATGATCCAGAGTTGCCCAAACTTGCTGGAAGCGAACAGATACCTGATCCGAGTGGAAGACGTGGCTCAGCTGAGCTGCTCTGATAAAGAGATTAGCGCTGCCCTCAGGTATGGGCCTCTTTCTGCTGAATTTGGATTCCCCAACATGCAGCTAAAGGCCCTGCTAACTGGCCCTGACTTCGCCACACTTGTtttacacactgtacaacacgcAGGCAACTCACACTTAACACAGATTGCCTTCCACAATCCAAATATTAAGAACGCGTTTGGTCTGAGGGGGCCCAGGCGGCAGTGGGTCTGTGCAGCAGAGACCAATGAAGACAAATTCACTCTGCTGTCAGCCCTGCAGAGTGCCATCAATGCTGCAATTggtgacaaataatgtaaaatgctgGCCTTTGAGTATTTCGTAACAACAGAAGTCCCCAGTCAACTGTTACAGGGTCTGATCGCCTCGGTTGTCTAACTGTACATATAAATCAGctatatttttataaactgaGCACTTCTGATTAGGTAGGCATATGCAAGTGCCATTGAGAGCACAATTGCCTTTTTTCTCATGTGTAACAGCAGAAATCATTGTACAGAATTGAGGTCAGCGCTGTTACACATATTATTCCTAAAATAAACCCAAGGATCTTCCATTGTCTGATTTTTCTAATTTGaaggtcatttattttttcaaatacaaaggATTGTTCCTTCTTTTCCATAGAGCATTGTAGTGAAGGCTGAGGAAAgatgtttaaagtttttttttaaaccattgtaTTGTCTTTTCATATAATAAAGTAAGATTAAACAGCCACAAGTACCACTTTTAGGCTCAAGTGTTACTCTTGCTCTAGCAGTCTGTAGCTAAGTGAtagaatataaaacatgtaaatggaTGGAAATGTTGTATTCCTGTAAATCCCTCAGGTCAGTGTTAGTTAGGGCTGATGAAACAGTTATTAATAATCATGTAAGCTTTCGATTCtgacattttaatcattttcttcATGGTGTATTACATAATCTTCAGCTAAGAtctgtgttttatgtaaaaGATGCAACAGTAACTTGTCTAAATTCGGTTTGCCTATTGTAGCAGCCTCCCTCTTTACTACCTTCCATTACCGTGAAGTGCAATTTTAAAAAGCGACTGATTGATTCAAATAATGTCCCTTGTTCTCCTTGAGCCATAAAAAAAGGAAGTGCCAACAAAATGGGGAATAATAAAAACTCAAGAGGCCGATCTTACAGATAAATGGAAGTTTAATTGAGATTAAATAGATGCTCAAGAATTCTGCACTCGCACTGTACTCATTAAACGGgtgaaagcaatacaaaaaattgttttttccatctttaatgttaaactcatttttttgtttaatttagtttacatACACATCTTCACCTTTGCACCTCAGGCAATTTACAATCTTGTTTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2631 lncRNA upstream 121947 12902635 ~ 12903622 (+) False AMCG00003643
TU2587 lncRNA upstream 637511 12387603 ~ 12388058 (+) True G2139
TU2565 lncRNA upstream 765926 12220322 ~ 12259643 (+) True G2125
TU2511 lncRNA upstream 936583 12087537 ~ 12088986 (+) True G2086
TU2454 lncRNA upstream 997376 12026126 ~ 12028193 (+) True G2042
TU2723 lncRNA downstream 37090 13074688 ~ 13080021 (+) True G2250
TU2742 lncRNA downstream 60963 13098561 ~ 13101316 (+) True G2264
TU2745 lncRNA downstream 64859 13102457 ~ 13102666 (+) True G2267
TU2760 lncRNA downstream 189637 13227235 ~ 13228357 (+) True G2281
TU2780 lncRNA downstream 209711 13247309 ~ 13254443 (+) True G2294
AMCG00003649 mRNA upstream 1330 13020377 ~ 13024239 (+) True AMCG00003649
AMCG00003641 mRNA upstream 99513 12918837 ~ 12926056 (+) True AMCG00003641
AMCG00003643 mRNA upstream 108567 12902566 ~ 12917002 (+) True AMCG00003643
AMCG00003642 mRNA upstream 123611 12891168 ~ 12901958 (+) True AMCG00003642
AMCG00003633 mRNA upstream 145212 12872513 ~ 12880357 (+) True AMCG00003633
AMCG00003647 mRNA downstream 15831 13053429 ~ 13055181 (+) True AMCG00003647
AMCG00003653 mRNA downstream 53495 13091093 ~ 13092094 (+) True AMCG00003653
AMCG00003655 mRNA downstream 118636 13156234 ~ 13206839 (+) True AMCG00003655
AMCG00003654 mRNA downstream 204453 13242051 ~ 13246855 (+) True AMCG00003654
AMCG00003656 mRNA downstream 282605 13320203 ~ 13325222 (+) True AMCG00003656
TU2385 other upstream 1448240 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 1534126 11490185 ~ 11491443 (+) False AMCG00003606
TU1883 other upstream 3244667 9777508 ~ 9780902 (+) True AMCG00003570
TU1763 other upstream 3762101 9255828 ~ 9263468 (+) True AMCG00003551
TU1569 other upstream 4373165 8649125 ~ 8652404 (+) True AMCG00003534
TU2754 other downstream 117462 13155060 ~ 13156627 (+) False AMCG00003655
TU2954 other downstream 1380918 14418516 ~ 14419732 (+) True G2440
TU3283 other downstream 2998065 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 4644219 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 5100157 18137755 ~ 18142633 (+) True AMCG00003779

Expression Profile