RNA id: AMCG00003651


Basic Information

Item Value
RNA id AMCG00003651
length 3684
RNA type mRNA
GC content 0.40
exon number 14
gene id AMCG00003651
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13055994 ~ 13065554 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTTCAGCAAAAGCTCTTGTGAGTCTGAAGGAGGGAAGTTTATCTAGCACCTGGAATGAGAAACACGGTTCTTTGCCAAAGTCTCAGAGCACCAAGGGAAGGAATACCTTTTCATCTATGGAAACGCCAACTAGGAGCTCAAAGAGGAGCCGCTTGTTCTGTGAGGAAGAGGACCGGCAGATGATCTCCAGGTCTCCTAGAAGAAGTCAGAGAGTTATAACAGTGCCTCAGaaacTTGCAACTGTTGCAACACCTGATAAAAAAGCATCACAAAAGATCGGGTTGAGATTGCGAAACCTCCTCAAGCTCCCCAAAGCACACAAGTGGTGCATCTATGAGTGGTTTTATTCCAATATCGACAGGCCGTTGTTTGAGGGGGACAAcgatttttgtgtttgcttgaAAGAATCGTTTCCGAACCTAAAAACCAGGAAGTTAACCCGAGTAGAATGGGCAACAATAAGAAGATTAATGGGAAAACCAAGACGGTGTTCTGCAGCATTCTTTGCAGAGGAGCGATCAGCACTGAAgcagaaaagacagaaaatcaGATTACTGCAGCAAAGAAAAGTCACAGACGTGTCGCACTGCAAAGATCTACCAGAGGAAATCCCACTGCCTTTAGTAATAGGAACCAAAGTCACAGCTCGACTGAGGGGTGTGCATGATGGCCTGTTTACGGGGCAGATAGACGCAGTTGACACCAGTGCCGCCACCTACAGAGTCACGTTTGACAGAAATGGGTTGGGAACGCACACCGTCCCCGACTATGAAGTGCTTAGCAATGAGCCTCACGAGACGATGCCCATCTCCGCCTTCGCTCAGAAACAGCGGCCATCCCGATTCCAGGCCTTCATGACGCCCCCCCGCCTGCCTTACGCCCCCTCCGCACAGCCTACGATCATGGATAACGATCCTTTACTGGGGCAGTCGCCGTGGAAAAGTAAGCTGTCGGGCACAGAAGGAGACACCCTGGGTGGCTTTCCAGTTAAATTTCTTGTGCAAGTTACGAGATTATCAAAAATCTTAATGATAAAGAAAGAACACATTAAGCAGCTGAAGGAAATGAACACTGAAGCAGAGAAATTGAAATCCTATTCGATGCCGATTGGGTTTGACTTTCAGAAGAGGTACGCCACCATTGTGTTGGACTTGGAGCAGCTCAACAAAGATCTGAACAAAGTCTTGCATGAAGTGCAGCAGTATTGCTATGAGCTGGCTCCCGAGCAGGGCATGCAGCCTGCAGACCAGCCCACAGATTTGCGGCGACGGTGCGAAGAAGAAGCACAAGAGATAGTGAGACAAGCCAACACGCTACCCAGCGGACAGCACTGTtgttTGGCAGAAGGGAGTGACTTGAATTCTTTCGAATTTAAGTCTCTGACTGATTCTCTAAATGACATCAAAAACTCAATAGATAGTTCGAATATCAGTTGCTTCCAGAATAACGTGGAGATCCACGTTGCGCACATTCAGACCGGTCTGAGCCAGATGGGGAATCTTCACGCGTTTGCAGCCAACAACACCAACAGAGTCTGAGCTTTAAATCCATCTATATTGTATATTAGGACACAATGGCTCTGTTCTCTGTATATGTTTTCATCTGTATCAGTGTGTAAATATACATCCACAGACTTCAGAGAAAGGTGACTTAAGAGTCTCCACATGCGCACACCCAGTAAGCACTCATAGTGGTAGTCTAGACCCAGACGACTGTCCATAGCACGGGCGTCTGTCCGCTGTTCACGTATGGCTTCATCCATTGCTGCAAGGCATTTCCTGCCTCCATTATTCCCTTTCATGGTCAAAAGTTTTTCCAaaagtgtttaataaatatggctgagttttaatttcacattactTCACCAATGTGTATATGGttctaaactaaactaaattgaATCTGCCAAGATTGTCTTCATCtgaaaataatagtaatgatcaAATATTGGATGATTTTGTCCACTGTTAATGCCAAAGTAAAGGAAGACATTCATGGACAGTAAAACGTTTGCAATTGCATTGTTAGGAATATCAGTCCTCAATTCTTAGTAGACACTTtggtgaaactgaaaatgtatctgcTCTGTCCTTACCTACAAACACTGTGCCAACTAAAGCAAATAATATAGtctgtatatattgtacagaGAGGCTCTGTAGTCGAtgtgtgaatattttttaaCCTCTCCTGGTATTGGCAATCAGGGTGATTTCTAGGCTCTAAGGACATCTCGCCTGTAATATGTTGCACATGAATCAGTGGAGAACAGCATAAACTAGGCTGAAGCTTAAAGCATTTTAAGGTTCCATAAACAATCAAATGACATTACTTCTGAGTCCtctacacatatatacagtgtatataaatgtatatactgtaaatattgcCCCTCATCTATTAATATTCACAAATGCTATCTCAGAAGGAGTGGATCGCTCTTCGTAACTCAActaaatttaaacacattttcctcCTTGGTCATTCAGACATCTTCTAAGTAAGTCTTTAATAAGTCTGATCTGCCAGAGGTCCAGTGTTTCCATTTCAGTCCAATTGAGAACTGACCAGTAAAACAGGTGATTTTATTTCAGATATCAAATCACTTGGCAGAAATCTCATGGTGCCTTTTCAGTTAACTGCCCTTTAAATATAGGCTACTGAGGGAAACTGAGTTCTGGGCCCTGTCTGCTTCACAAAAAAGTTTCTGGAATTCTCTTATTATTCTTAGAACTTTTTAAGTAACTTAAATTTTAACTGATGTCTTTGTGCCAAACAAGACTtcattgttagttttttcttgtcttttaatGTCACACCTTTTGTTCTGGCGCAGTCCTCGATCAGAGTTTGTAAAGTTCATACTTGTTCAATTTAAAGAGAGCATTGCAAATATATACTGGAATGTGTAACAAAGTTTAGAACAgttcaatatttttgttattctctGCAGGAGTAGGACATGGCTTGCTTGtataatatatgtttgtgtaaaGATTTTAACTTTCAACTGTTGCTACATCCTCTCGGAAGTAGAGGCCCTATgcagaaaattgtatttactggGAGACtgcatatttgtaatttattaaatgttatatttctgtGGAAGCAAACCTTAAAAAAGGCCTTTctgatgtaaaatgttaaaccaGGACAGAGtccattgattgttttgtgtAGATTAATGTAAAGTTTAACATGcaattgctttttaaagctTGTAGGTTTTCTTGTAGAAGTTTCAGTATGCCTCTTATATAGAGGTAacttttatacttttatgtAAGTATATTGAAAGAAATATTTTTATCTTCCAATTTTGTACACggttatatttttttcatatattttaaagcgGATCTGTGAGGTGTTGACTGACCCTCATTGTTTTGCTTGAGATATACGCTGTCCTTGACCATAAACAACTTCTCTGCTTTAAATACATGAGGACATGTTGATCTTAAATGCACAATATTACGTTCAGATTATTTGAAGCCTCTTTATATCTTCACACAACACCTCCTTCAGCCACACAAGTAGAATTGCCGAACCCCTAGACTATTTATAAACGTTGTTTCACTGGGTGGCTATGCAAAGTTTTAGCAGTCTGGTgactctttaaatgtgtatttgtaaatattttgttcttgcagttttgaagtattaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0017053 transcription repressor complex cellular_component

KEGG:

id description
K21773 LIN9; protein lin-9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2703 lncRNA downstream 21934 13033239 ~ 13034060 (-) True G2235
TU2702 lncRNA downstream 23230 13031928 ~ 13032764 (-) True G2234
TU2653 lncRNA downstream 154049 12898431 ~ 12901945 (-) True G2196
TU2618 lncRNA downstream 186043 12869501 ~ 12869951 (-) True G2168
TU2590 lncRNA downstream 637658 12417928 ~ 12418336 (-) True G2142
TU2732 lncRNA upstream 6242 13071796 ~ 13081944 (-) False AMCG00003652
TU2733 lncRNA upstream 6242 13071796 ~ 13081944 (-) False AMCG00003652
TU2734 lncRNA upstream 12094 13077648 ~ 13080021 (-) True G2257
TU2744 lncRNA upstream 34958 13100512 ~ 13101318 (-) True G2266
TU2769 lncRNA upstream 66066 13131620 ~ 13143528 (-) True G2285
AMCG00003650 mRNA downstream 5602 13037692 ~ 13050392 (-) True AMCG00003650
AMCG00003645 mRNA downstream 87838 12926695 ~ 12968156 (-) True AMCG00003645
AMCG00003646 mRNA downstream 149105 12905372 ~ 12906889 (-) True AMCG00003646
AMCG00003644 mRNA downstream 164859 12883467 ~ 12891135 (-) True AMCG00003644
AMCG00003637 mRNA downstream 190241 12862807 ~ 12865753 (-) True AMCG00003637
AMCG00003652 mRNA upstream 14638 13080192 ~ 13116660 (-) True AMCG00003652
AMCG00003662 mRNA upstream 51812 13117366 ~ 13212180 (-) True AMCG00003662
AMCG00003660 mRNA upstream 151987 13217541 ~ 13233616 (-) True AMCG00003660
AMCG00003661 mRNA upstream 168519 13234073 ~ 13236047 (-) True AMCG00003661
AMCG00003658 mRNA upstream 185544 13251098 ~ 13270245 (-) True AMCG00003658
TU2704 other downstream 20505 13034953 ~ 13035489 (-) True G2236
TU2508 other downstream 977842 12076038 ~ 12078152 (-) False AMCG00003625
TU2480 other downstream 1116211 11923808 ~ 11939783 (-) True AMCG00003623
TU2225 other downstream 1951322 11103326 ~ 11104672 (-) False AMCG00003595
TU2164 other downstream 2099659 10951176 ~ 10956335 (-) False AMCG00003586
TU2747 other upstream 38802 13104356 ~ 13111128 (-) False AMCG00003652
TU2876 other upstream 943904 14009458 ~ 14013021 (-) True G2373
TU3027 other upstream 1745232 14810786 ~ 14811331 (-) True G2500
TU3242 other upstream 2450119 15515673 ~ 15591730 (-) True G2665
TU3879 other upstream 4877023 17942577 ~ 17944942 (-) True G3181

Expression Profile