RNA id: TU2732


Basic Information

Item Value
RNA id TU2732
length 779
lncRNA type sense_over
GC content 0.59
exon number 5
gene id AMCG00003652
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13071796 ~ 13116660 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTATTTTTGTACTTCCTGATCTTTGATCACTTAACATTGAGGTTTCCATGCACTGCCAGCATAACTTGGTAGGTATTGCGATACTAAGCAAGATGAGAGAAGAAGCTGTCCGGACACCCTTGTCAGCATCAACTCCTCTcggcctctctctcctccctccaggCAGTGTCTGACGATTCTTCGGACTCCCACATCCTGGACCTGTCAAATCGCTTCTACACGCTCATACCACACGACTTTGGGATGAAGAAGCCACCCCTCTTGAATAATCTGGAGTACATTCAGGCCAAAGTGCAGATGCTGGATAATCTCCTCGATATTGAGGTGGCGTACAGCCTTCTCCGGGGAGGAACCGAGGATGAGAAGAAAGATCCCTTTGACATCAACTATGAGAAACTCAAAACAGAAATCCAGGTAATGAGCTCTTTACCAGGGAAAGCATAGTGTGAAAGgtcTTGGTAAAACTGCACCAGATCCCAGTTCTACTGTGACATTGAATGGCATTGAGGTCCCGATCGGAAAAGGTGTCCCTTCAAATGTTCAGGACACCAGCCTGCTCTACAATGAATACATTGTATATGATGTGGCGCAGGTCAGCCTCAACTACCTGTTGAAAGTCAAGTTTAACTACCAGAGTTCGCTGTGGTGATGCTGTCGTTCACAGGCAGAAGGCCCACCTGAGGTGTGAGGCTGCTTTGGCTTAAACCCCCGATCCCAGAATGCGGATGGTCGTTGCTTTGGAACCACAGATCTNNNNNNNNNNGTACTTTCTTTTCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2703 lncRNA downstream 37736 13033239 ~ 13034060 (-) True G2235
TU2702 lncRNA downstream 39032 13031928 ~ 13032764 (-) True G2234
TU2653 lncRNA downstream 169851 12898431 ~ 12901945 (-) True G2196
TU2618 lncRNA downstream 201845 12869501 ~ 12869951 (-) True G2168
TU2590 lncRNA downstream 653460 12417928 ~ 12418336 (-) True G2142
TU2744 lncRNA upstream 18568 13100512 ~ 13101318 (-) True G2266
TU2769 lncRNA upstream 49676 13131620 ~ 13143528 (-) True G2285
TU2772 lncRNA upstream 90688 13172632 ~ 13178172 (-) False G2287
TU2771 lncRNA upstream 95516 13177460 ~ 13178172 (-) True G2287
TU2776 lncRNA upstream 151551 13233495 ~ 13236993 (-) True G2291
AMCG00003651 mRNA downstream 6242 13055994 ~ 13065554 (-) True AMCG00003651
AMCG00003650 mRNA downstream 21404 13037692 ~ 13050392 (-) True AMCG00003650
AMCG00003645 mRNA downstream 103640 12926695 ~ 12968156 (-) True AMCG00003645
AMCG00003646 mRNA downstream 164907 12905372 ~ 12906889 (-) True AMCG00003646
AMCG00003644 mRNA downstream 180661 12883467 ~ 12891135 (-) True AMCG00003644
AMCG00003662 mRNA upstream 35422 13117366 ~ 13212180 (-) True AMCG00003662
AMCG00003660 mRNA upstream 135597 13217541 ~ 13233616 (-) True AMCG00003660
AMCG00003661 mRNA upstream 152129 13234073 ~ 13236047 (-) True AMCG00003661
AMCG00003658 mRNA upstream 169154 13251098 ~ 13270245 (-) True AMCG00003658
AMCG00003657 mRNA upstream 199507 13281451 ~ 13283514 (-) True AMCG00003657
TU2704 other downstream 36307 13034953 ~ 13035489 (-) True G2236
TU2508 other downstream 993644 12076038 ~ 12078152 (-) False AMCG00003625
TU2480 other downstream 1132013 11923808 ~ 11939783 (-) True AMCG00003623
TU2225 other downstream 1967124 11103326 ~ 11104672 (-) False AMCG00003595
TU2164 other downstream 2115461 10951176 ~ 10956335 (-) False AMCG00003586
TU2747 other upstream 22412 13104356 ~ 13111128 (-) False AMCG00003652
TU2876 other upstream 927514 14009458 ~ 14013021 (-) True G2373
TU3027 other upstream 1728842 14810786 ~ 14811331 (-) True G2500
TU3242 other upstream 2433729 15515673 ~ 15591730 (-) True G2665
TU3879 other upstream 4860633 17942577 ~ 17944942 (-) True G3181

Expression Profile