RNA id: TU2747


Basic Information

Item Value
RNA id TU2747
length 329
RNA type TUCP
GC content 0.55
exon number 3
gene id AMCG00003652
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13071796 ~ 13116660 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNGCCTGTTCTGAGGTTGAAATCGATTGCCTGACTGGGGATCACAAGAACCTTTGTACCACCATAGTTATGGATGTTGGCATCAGTCTGAACCCAGCGATCGACATTGGGCAGGTGGAAGGTGCATTCATGCAAGGGGTGGGTCTGTTCACCTTGGAGGAGCTACGCTACTCTCCTGAGGGAGTCTTGTACACCAGGGGCCCTGGCATGTACAAGATCCCTGGCTTTGGAGACATCCCCACCAAGCTCCGAGTGTCCCTCCTCCGAGACGCACCCAACGCCAAGGCCATCTACTCCTCCAAGGTGAGCCCTGCCTTCCTGCTGTAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2744 lncRNA downstream 3038 13100512 ~ 13101318 (-) True G2266
TU2732 lncRNA downstream 22412 13071796 ~ 13081944 (-) False AMCG00003652
TU2733 lncRNA downstream 22412 13071796 ~ 13081944 (-) False AMCG00003652
TU2734 lncRNA downstream 24335 13077648 ~ 13080021 (-) True G2257
TU2703 lncRNA downstream 70296 13033239 ~ 13034060 (-) True G2235
TU2769 lncRNA upstream 20492 13131620 ~ 13143528 (-) True G2285
TU2772 lncRNA upstream 61504 13172632 ~ 13178172 (-) False G2287
TU2771 lncRNA upstream 66332 13177460 ~ 13178172 (-) True G2287
TU2776 lncRNA upstream 122367 13233495 ~ 13236993 (-) True G2291
TU2820 lncRNA upstream 303733 13414861 ~ 13415156 (-) True G2324
AMCG00003651 mRNA downstream 38802 13055994 ~ 13065554 (-) True AMCG00003651
AMCG00003650 mRNA downstream 53964 13037692 ~ 13050392 (-) True AMCG00003650
AMCG00003645 mRNA downstream 136200 12926695 ~ 12968156 (-) True AMCG00003645
AMCG00003646 mRNA downstream 197467 12905372 ~ 12906889 (-) True AMCG00003646
AMCG00003644 mRNA downstream 213221 12883467 ~ 12891135 (-) True AMCG00003644
AMCG00003662 mRNA upstream 6238 13117366 ~ 13212180 (-) True AMCG00003662
AMCG00003660 mRNA upstream 106413 13217541 ~ 13233616 (-) True AMCG00003660
AMCG00003661 mRNA upstream 122945 13234073 ~ 13236047 (-) True AMCG00003661
AMCG00003658 mRNA upstream 139970 13251098 ~ 13270245 (-) True AMCG00003658
AMCG00003657 mRNA upstream 170323 13281451 ~ 13283514 (-) True AMCG00003657
TU2704 other downstream 68867 13034953 ~ 13035489 (-) True G2236
TU2508 other downstream 1026204 12076038 ~ 12078152 (-) False AMCG00003625
TU2480 other downstream 1164573 11923808 ~ 11939783 (-) True AMCG00003623
TU2225 other downstream 1999684 11103326 ~ 11104672 (-) False AMCG00003595
TU2164 other downstream 2148021 10951176 ~ 10956335 (-) False AMCG00003586
TU2876 other upstream 898330 14009458 ~ 14013021 (-) True G2373
TU3027 other upstream 1699658 14810786 ~ 14811331 (-) True G2500
TU3242 other upstream 2404545 15515673 ~ 15591730 (-) True G2665
TU3879 other upstream 4831449 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 5035532 18146660 ~ 18152381 (-) True AMCG00003782

Expression Profile