RNA id: AMCG00003654


Basic Information

Item Value
RNA id AMCG00003654
length 1734
RNA type mRNA
GC content 0.39
exon number 5
gene id AMCG00003654
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13242051 ~ 13246855 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAAGATGGAGGCGGCGGTGTTCATCCTCTCTCTGATCGACTGCTGTGCTTTAATTTTCCTGTCAGTGTACTTTATAATTACTCTCTCAGATCTAGAGTGTGATTACATTAACTCAAGATCTTGCTGttccaaattaaacaaaTGGGTTGTTCCAGAATTGGTAGGTCAGGGAATAGCCACAACTCTGATGCTGGTTTCATTGCACTGGTTTGTCTTCCTTCTCAATCTGCCTGTTGCAGCGTGGAACATGTACAGACTTATAAAGGTTCCTCTGGGGAATATGGGAGTTTTTGACCCAACAGAGATTCACAATCGAGGGCAGCTGAAATCCCACATGAAGGAGGCGATGATCAAACTGGGCTTCCACcttctgtgtttctttatttacttgtaCAGCATGATCCTGGCGTTAATCAACGACTGACGTCTACAGCACCTTTGGACTGAAGCTGCCAAATCATGAACGTCTCCTTTAACTGAGCATTTGTTCTCATTTGTTCTCGATATGTAATCTGCCAGCAGGAATCAAATCAACACCCCAGCATCACATGTGACAATGGAAAATGATACATCAGGCTTCGACACTTAATCTGTGGGAGACaccactttgtgtgtgtgtgtgttacacagCTTAAGCAAAACCTGGatcaacctgtaatttaaacacTTGACTTGTGTTTCTGGTGTTCTGTGCTACGTTATCTATAAGGGGTGATATTTTGTTCTGCCAGGACACTTTTACAACCCAGATTCATTCATTGTGGCATCCATGATACTCTGGTCCTATTTTAGAAGAATTAGCTTATTCCCAAACTCACTCCAGCGATGACCAATCAAATGCCTGTATAACTACAACCAAgatgagtgacggttcttctcCATTTGCTGCTGTAAATAACCATAACCATTTAGGCACTGGGAAGCAATAGCTGCTTAACTTTCATTGTAATTGCCAAGTCCTTTAGCCATTGACGACAGTGTTCACAGTGTAAAATCAGGTTTCCCTCTTCTCAACAGACAAATCATATTCCACGAAGAAGCCACTCTTACTTAATGAAGTCTTTCTGCTACTTTCATGGTGTGGTTAGCAGTGTTCTCACACTCCTGGGTAGCCCaaaactagtgctaatctggtctgtgaaaccagccctttaCGCAAGATTAATtgggataaaaaacaaaacaaaacttttatgTATCATGCATTGTATGAATTCAAAAAAGTTCAGTCAGTTTCAAGTCACTGTTCATTGTACAGAGGTTTAAGAAGTATTCAGACTTTGTAGagttaaacttattttttttaaaagcttttgaaatgtgcagtttctTAAATAAATTTACTTTCTCCAAATGCCTTTTTTCCTTATTAGTGGTTTAGTGCTTTACAATGTAGCCACACAATTTTTCTAAGTTCTTTGTTAAACAGAAAGGTGGGTTTATTATCACGAAGAGTATGAAGGAAACGTATGCATCGTAAGACTAAATATTTGATGTAGCTCAACAAAAAAGAGGACATATGGGCCCACCTGGAAGTTAAATTGCAAGTGTATTTACAATAGCAGTAGGAGGCAGTGCTGGCtgatgggggggaaaaaactatcAAATCCCACTGTGAGGGTTCACTGGGATCcttcaaaaataatgtattaaaaataattctaaaaCTAAACTTGTCAGATTCTTAGCTGTACTTTTACACCATATTCTTAAAAGAAATATTTCAAGATTAT

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K20368 CNIH, ERV14; protein cornichon

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2760 lncRNA upstream 13694 13227235 ~ 13228357 (+) True G2281
TU2745 lncRNA upstream 139385 13102457 ~ 13102666 (+) True G2267
TU2742 lncRNA upstream 140735 13098561 ~ 13101316 (+) True G2264
TU2723 lncRNA upstream 162030 13074688 ~ 13080021 (+) True G2250
TU2631 lncRNA upstream 338429 12902635 ~ 12903622 (+) False AMCG00003643
TU2780 lncRNA downstream 454 13247309 ~ 13254443 (+) True G2294
TU2819 lncRNA downstream 168076 13414931 ~ 13415156 (+) True G2323
TU2822 lncRNA downstream 238737 13485592 ~ 13485807 (+) True G2326
TU2825 lncRNA downstream 261032 13507887 ~ 13509930 (+) True G2329
TU2826 lncRNA downstream 263383 13510238 ~ 13510674 (+) True G2330
AMCG00003655 mRNA upstream 35212 13156234 ~ 13206839 (+) True AMCG00003655
AMCG00003653 mRNA upstream 149957 13091093 ~ 13092094 (+) True AMCG00003653
AMCG00003647 mRNA upstream 186870 13053429 ~ 13055181 (+) True AMCG00003647
AMCG00003648 mRNA upstream 204453 13025569 ~ 13037598 (+) False AMCG00003648
AMCG00003649 mRNA upstream 217812 13020377 ~ 13024239 (+) True AMCG00003649
AMCG00003656 mRNA downstream 73348 13320203 ~ 13325222 (+) True AMCG00003656
AMCG00003666 mRNA downstream 490747 13737602 ~ 13744368 (+) True AMCG00003666
AMCG00003668 mRNA downstream 550424 13797279 ~ 13797599 (+) True AMCG00003668
AMCG00003670 mRNA downstream 762616 14009471 ~ 14013046 (+) True AMCG00003670
AMCG00003669 mRNA downstream 809596 14056451 ~ 14067694 (+) True AMCG00003669
TU2754 other upstream 85424 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 199454 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 1664722 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 1750608 11490185 ~ 11491443 (+) False AMCG00003606
TU1883 other upstream 3461149 9777508 ~ 9780902 (+) True AMCG00003570
TU2954 other downstream 1171661 14418516 ~ 14419732 (+) True G2440
TU3283 other downstream 2788808 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 4434962 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 4890900 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 4899805 18146660 ~ 18152314 (+) True G3108

Expression Profile