RNA id: AMCG00003655


Basic Information

Item Value
RNA id AMCG00003655
length 480
RNA type mRNA
GC content 0.57
exon number 5
gene id AMCG00003655
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13155060 ~ 13206839 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATGTTGGCATCAGTCTGAACCCAGCGATCGACATTGGGCAGGTGGAAGGTGCATTCATGCAGGGGGTGGGTCTGTTCACCTTGGAGGAGCTGCGCTACTCTCCTGAGGGAGTCTTGTACACCAAGGGCCCCGGCATGTACAAGATCCCTGGCTTTGGAGACATCCCCACCAAGCTCCGAGAAGGCAGGGCTCACCTTGGAGGAGTAGATGGCCTTGGCGTTGGGTGCGTCTCGGAGGAGGGACACTCGGAGCTTGGTAGGGATGTCTCCAAAGCCAGGGATCTTGTACATGCCGGGGCCCCTGGTGTACAAGACTCCCTCAGGAGAGTAGCGCAGCTCCTCCAAGCTCCAGAAGCCTTCCAGGTGCCCCCAGAAATGGAAGAGCATGTGGAGATCCAAGTCCCAGAGACAGGTCCTAGGAGATCCCACAGACCGAATCAAGTCAATGCCAATCTTGTCAAAATGCCAATGCTATGA

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2745 lncRNA upstream 53568 13102457 ~ 13102666 (+) True G2267
TU2742 lncRNA upstream 54918 13098561 ~ 13101316 (+) True G2264
TU2723 lncRNA upstream 76213 13074688 ~ 13080021 (+) True G2250
TU2631 lncRNA upstream 252612 12902635 ~ 12903622 (+) False AMCG00003643
TU2587 lncRNA upstream 768176 12387603 ~ 12388058 (+) True G2139
TU2760 lncRNA downstream 20396 13227235 ~ 13228357 (+) True G2281
TU2780 lncRNA downstream 40470 13247309 ~ 13254443 (+) True G2294
TU2819 lncRNA downstream 208092 13414931 ~ 13415156 (+) True G2323
TU2822 lncRNA downstream 278753 13485592 ~ 13485807 (+) True G2326
TU2825 lncRNA downstream 301048 13507887 ~ 13509930 (+) True G2329
AMCG00003653 mRNA upstream 64140 13091093 ~ 13092094 (+) True AMCG00003653
AMCG00003647 mRNA upstream 101053 13053429 ~ 13055181 (+) True AMCG00003647
AMCG00003648 mRNA upstream 118636 13025569 ~ 13037598 (+) False AMCG00003648
AMCG00003649 mRNA upstream 131995 13020377 ~ 13024239 (+) True AMCG00003649
AMCG00003641 mRNA upstream 230178 12918837 ~ 12926056 (+) True AMCG00003641
AMCG00003654 mRNA downstream 35212 13242051 ~ 13246855 (+) True AMCG00003654
AMCG00003656 mRNA downstream 113364 13320203 ~ 13325222 (+) True AMCG00003656
AMCG00003666 mRNA downstream 530763 13737602 ~ 13744368 (+) True AMCG00003666
AMCG00003668 mRNA downstream 590440 13797279 ~ 13797599 (+) True AMCG00003668
AMCG00003670 mRNA downstream 802632 14009471 ~ 14013046 (+) True AMCG00003670
TU2685 other upstream 113637 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 1578905 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 1664791 11490185 ~ 11491443 (+) False AMCG00003606
TU1883 other upstream 3375332 9777508 ~ 9780902 (+) True AMCG00003570
TU1763 other upstream 3892766 9255828 ~ 9263468 (+) True AMCG00003551
TU2954 other downstream 1211677 14418516 ~ 14419732 (+) True G2440
TU3283 other downstream 2828824 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 4474978 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 4930916 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 4939821 18146660 ~ 18152314 (+) True G3108

Expression Profile