RNA id: AMCG00003656


Basic Information

Item Value
RNA id AMCG00003656
length 2048
RNA type mRNA
GC content 0.52
exon number 10
gene id AMCG00003656
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13320203 ~ 13325222 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGGAGCAGCGCTGCTGACGTGTAGGTAAGGAAGTGCTTTCgccgggagagggagaggggatcTGCGCTGTTTTCGGCAGCCTGTGTGGTGGACTGGGAGAATCATGGGCAAGCGAAGGGTGCCAGACTTGTATCGTGCGCCCTTTCCTCTGTACACTGTGGGTGTGCACCGAGAGACTGGATTGGTCATCACTGCGGGGGGAGGTGGAGCATCCAAGACTGGCATTAAGAATGGGCTGCATTTCCTGCGCATGGAGAGGGTGGATGGTCAGCTCACTGCCTCACTGGCCCACTCCTTTGATACGGACCCTCGAGCCACCATGAGTCTGGCGTTAGGAGGTGATGTCATCGCAGCGGGACAGGATGCCAGCTGCCATCTCCTGCGCTTCAAGGAGCGGTCAGGCAAACCTCCAGGGAAAGGAGGAGGTGGGGATCAGGGAGTCCAGAGGAGGAAAGGGGGCCGTAGTCAGGCGGCGGGCGACGCAAGCCCAGAGACGCACAATGACACGACTCAGATCACCGTGGAGAGTGTGGGCGAGGTGCAGACGGACTTCAGCACCGACGCCCTGCAGAAGTGCGTGCGTTTCAGTGCCGACCTGAACTTGCTGATTACCGGAGGCGCCGATGGACATGTCCGAGTGTGGGAGTACCCCGCCATGAAAAAGAAGTTTGATTTCAAAGCGCATGAAGGTGAAGTAGAAGATTTAGATATCAGCCCTGATAACAAGCAGCTGGTGACAGTAGGTCGAGACTTCACCTGCTGCGTTTGGCGGAATGACCAACTGGCCACAGGACTGCGTTGGCATGAGAACATCCCCAACATCCCAGAGAAGATGTATCGCTACCAGGCCTGCAGGCAAGAGCTTGCATTCTTACATATCACATCACATGATACTTCTACATTTCTGTTTGCCAAGGTGGAAGACAAGGCAGAAGCTCTGCGCCTTTACACAGTCCAGATCCCTCACAAGCGGGACCGCCGGCCCCCGCCCTGCTACCTCACCAAGTGGGATGGGCGCAACTTCCTGCCTCTCCTCACACAGCCCTGTGGCAACGAAGTCATATCTTGTCTGGCTGTCAGTGATTCGGGGACGTTTCTGGGCCTAGGGACTGTGACAGGATCAGTGGCCATTTacatctccttctccctgcaAAAACTCTACTATGTCCAGGAAGCGCACGGCATTGTGGTCACAGACTTGGCTTTCCTGCCAGACACGCCGCAGGGCAGGACTGTGCTCGGAGACAATGAGATGGCTATGCTGAGCGTGGCGGTGGATAGCAGATGTAAAATGCACGTTCTTCCAAATCGAAAATCTTTCCCAGTCTGGCTGGTTCTCCTCCTCTGTGCTCTTATGGTCGTTGGTGTGATCTTCCTCCTGCAGCAAGCTTTCCCCGGGTTCATCTAGGCAGGACAGTGTCTCCTAGGGCTGCTCAGGAAGGGGGCGGGGTCTCGGACACGCCCCCCTCCCCACTTCTGCTCAGGGACCTTCGCTCCTAGAATGGATTGACCGCAACCAATCTGTCCAAAGAGAAGAGACTTAATGACACTTGATTCTGAAGGACACCTGTTCCGACCAAACACGCGATAGCTTagtgaattaaaacatattaaccGGAAGGATCTTGCGTTTGTCGCCAATATTGTGAACCGTTCCAGgcttttataaaaacattatttacattttatctattttttggggggaagaaaaggGAGAAGGGACTTGAGATAGTCACATGAATTTATATACGTTTGAGATCGAGATGCAGCAACGgaaaagcaaaagcaagaaAACCTGTGTATTGTGATCTGGACCTTTAATGGTGAAGGAAGATgaataaaaacttaaaaggtaatttttattccattttgaatgtgtattttaaacctgttttaATCCAATTACTGACCtgatgttatatatacagtctTAATGAAGTGGTGCTGTCAAAACTTTAGACACTGCCCTTCTGTGGGGCAGGATGGTGGAGATTTGCATTGCCGGTCGGGGACAAGTACACCTGTTTTGGGCTGGTGGGAGgtggc

Function

GO: NA

KEGG:

id description
K14003 PREB, SEC12; prolactin regulatory element-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2780 lncRNA upstream 65760 13247309 ~ 13254443 (+) True G2294
TU2760 lncRNA upstream 91846 13227235 ~ 13228357 (+) True G2281
TU2745 lncRNA upstream 217537 13102457 ~ 13102666 (+) True G2267
TU2742 lncRNA upstream 218887 13098561 ~ 13101316 (+) True G2264
TU2723 lncRNA upstream 240182 13074688 ~ 13080021 (+) True G2250
TU2819 lncRNA downstream 89709 13414931 ~ 13415156 (+) True G2323
TU2822 lncRNA downstream 160370 13485592 ~ 13485807 (+) True G2326
TU2825 lncRNA downstream 182665 13507887 ~ 13509930 (+) True G2329
TU2826 lncRNA downstream 185016 13510238 ~ 13510674 (+) True G2330
TU2827 lncRNA downstream 186313 13511535 ~ 13511829 (+) True G2331
AMCG00003654 mRNA upstream 73348 13242051 ~ 13246855 (+) True AMCG00003654
AMCG00003655 mRNA upstream 113364 13156234 ~ 13206839 (+) True AMCG00003655
AMCG00003653 mRNA upstream 228109 13091093 ~ 13092094 (+) True AMCG00003653
AMCG00003647 mRNA upstream 265022 13053429 ~ 13055181 (+) True AMCG00003647
AMCG00003648 mRNA upstream 282605 13025569 ~ 13037598 (+) False AMCG00003648
AMCG00003666 mRNA downstream 412380 13737602 ~ 13744368 (+) True AMCG00003666
AMCG00003668 mRNA downstream 472057 13797279 ~ 13797599 (+) True AMCG00003668
AMCG00003670 mRNA downstream 684249 14009471 ~ 14013046 (+) True AMCG00003670
AMCG00003669 mRNA downstream 731229 14056451 ~ 14067694 (+) True AMCG00003669
AMCG00003673 mRNA downstream 766791 14092013 ~ 14190098 (+) True AMCG00003673
TU2754 other upstream 163576 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 277606 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 1742874 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 1828760 11490185 ~ 11491443 (+) False AMCG00003606
TU1883 other upstream 3539301 9777508 ~ 9780902 (+) True AMCG00003570
TU2954 other downstream 1093294 14418516 ~ 14419732 (+) True G2440
TU3283 other downstream 2710441 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 4356595 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 4812533 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 4821438 18146660 ~ 18152314 (+) True G3108

Expression Profile