RNA id: AMCG00003664


Basic Information

Item Value
RNA id AMCG00003664
length 908
RNA type mRNA
GC content 0.45
exon number 6
gene id AMCG00003664
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13509791 ~ 13514900 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCATTCCCTCAGTATTATACAACCCTTACTTTAGACGCCTCAGGTTTAATGTCACATCAATGGAGAAGAACTCCTCAAACCTGGTGAAGGCTGAACTGCGAGTTTTCCGAATTCAAAACCCGAAGGCGAGAGTCTTCGAGCAGAGGATAGAGCTGTATCAGgTCCTTGGTCACAAAGACCTAACATCACCAAACCAGCGCTACATTGACAGCAAAGTGGTGAAAACGAGAACGGAGGGAGAATGGCTGTCTTTTGACGTTACGGAAGCCGTGAGCGAGTGGCTTCAACACAGAGGCAAGAACATTACAGTTGCCGCACATGTAACCCAGAATAGAAACAATGGATTCAAAATAAGTTTGCACTGCCCCTGCTGCACGTTTGTGCCTTCGAACAATAACATCATACCAAATAAGAGCGAAGAACTGGAAACTAGATTTGCAGGTTTCGATGACGGCGTCCATGCAGAGAATTCGAAACAACTCAATAAGAGGAAACATAGCAGGAAGAATCCCCACCTCTTACTGATGCTGCTCCCATCATACAGACTGGAAACCCCACACAGTAATCGAAGGAAGAAACGGGCTCTGGACGCTGCCTACTGTTCCAAgAATGTACAGGACAACTGCTGCTTGCGCCCGTTATTCATTGACTTTAAGAGGGATCTTGGTTGGAAATGGATCCATGAACCAAAAGGATATAATGCAAATTTCTGTGCAGGGGCATGCCCATATTTATGGAGTGCTGATACTCAACATACAAAGGTACTTGGTATGTACAATACAATGAACCCAGAAGCATCTGCGTCACCATGCTGTGTTTCCCAAGACTTAGAACCTCTTACCATCCTGTATTTCATCGGCAAAACCCCCAAAATCGAACAGCTATCCAACATGATTGTTAAGTCT

Function

GO:

id name namespace
GO:0060022 hard palate development biological_process
GO:0016049 cell growth biological_process
GO:0005615 extracellular space cellular_component
GO:0005160 transforming growth factor beta receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K13376 TGFB2; transforming growth factor beta-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2833 lncRNA downstream 861 13507892 ~ 13508930 (-) True G2337
TU2820 lncRNA downstream 94635 13414861 ~ 13415156 (-) True G2324
TU2776 lncRNA downstream 272798 13233495 ~ 13236993 (-) True G2291
TU2772 lncRNA downstream 331619 13172632 ~ 13178172 (-) False G2287
TU2771 lncRNA downstream 331619 13177460 ~ 13178172 (-) True G2287
TU2847 lncRNA upstream 214547 13729447 ~ 13732039 (-) False AMCG00003667
TU2957 lncRNA upstream 894336 14409236 ~ 14410253 (-) True G2443
TU2958 lncRNA upstream 900479 14415379 ~ 14415673 (-) True G2444
TU2959 lncRNA upstream 903678 14418578 ~ 14419732 (-) True G2445
TU2961 lncRNA upstream 905831 14420731 ~ 14421315 (-) True G2447
AMCG00003663 mRNA downstream 110944 13387807 ~ 13398847 (-) True AMCG00003663
AMCG00003659 mRNA downstream 192893 13290299 ~ 13316898 (-) True AMCG00003659
AMCG00003657 mRNA downstream 226277 13281451 ~ 13283514 (-) True AMCG00003657
AMCG00003658 mRNA downstream 239546 13251098 ~ 13270245 (-) True AMCG00003658
AMCG00003661 mRNA downstream 273744 13234073 ~ 13236047 (-) True AMCG00003661
AMCG00003665 mRNA upstream 30451 13545351 ~ 13562197 (-) True AMCG00003665
AMCG00003667 mRNA upstream 149843 13664743 ~ 13729698 (-) True AMCG00003667
AMCG00003677 mRNA upstream 823526 14338426 ~ 14354533 (-) True AMCG00003677
AMCG00003685 mRNA upstream 872655 14387555 ~ 14394904 (-) True AMCG00003685
AMCG00003686 mRNA upstream 911385 14426285 ~ 14461583 (-) True AMCG00003686
TU2747 other downstream 398663 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 474302 13034953 ~ 13035489 (-) True G2236
TU2508 other downstream 1431639 12076038 ~ 12078152 (-) False AMCG00003625
TU2480 other downstream 1570008 11923808 ~ 11939783 (-) True AMCG00003623
TU2225 other downstream 2405119 11103326 ~ 11104672 (-) False AMCG00003595
TU2876 other upstream 494558 14009458 ~ 14013021 (-) True G2373
TU3027 other upstream 1295886 14810786 ~ 14811331 (-) True G2500
TU3242 other upstream 2000773 15515673 ~ 15591730 (-) True G2665
TU3879 other upstream 4427677 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 4631760 18146660 ~ 18152381 (-) True AMCG00003782

Expression Profile