RNA id: AMCG00003667


Basic Information

Item Value
RNA id AMCG00003667
length 1566
RNA type mRNA
GC content 0.49
exon number 14
gene id AMCG00003667
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13664743 ~ 13732039 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aTTGCTGAGGAAAACAGAAGCAAAGAAAACAGTGCTGCTATTCAGATCCAGGCCTGGTTCAGAGGATGCGCAGTTCGAGCCTATCTGAGGCacataaacagaaaagcaaccctCATCCAGAAGAGATGGCGAGGCTACACCGCACGAATGTACTTTAGGCAAATGGTAAAGAcagcatattttattatgaagatGAATTTCTACAATGAGATGGCTGTCAGGATTCAAAAAAGATGGAGAGGCTACTATATCagaaaatatgtacataattaCTATGCAAGGAAGCACTACTTGGAAGGCCTGACATTGATGAATGAAAGAATCAGAAAACAGCTGGTGGAGTTTGCAGACATACAGAAGAGCGAGAGGGAACGTATGGCACTAGatagagaagagagaaaattgGTTTACCAAGCACAAAAGATGCATTACCTCCTCAGCACACAACAGTGCCCTGGTGTATTCAACTCACCATACAGACCTTTCCCGGATGAGATGGAGCTCAGACTGCAGAGTGTCAGAGCTCTGAGCCCGGCAGCAGAGAGCACCCGGCGGCTGGCCCCTGCCACCCGGCCCATCACACAGCCTCTGCCACCCATCCCCAGACAGAGACCGCAGGGGCCCTTCCGAGATCCCGCTGAAGTATTGCAGCAGCGGTACAAGCCTCTGGAGCCAACCTTGCGCGTGGCCACATCAATCACGTCAGAGGAGGAGGCCAGAGAGGAGCAGAGGCGGGAGGAGTGGAGGGGCCGCGTGAACGAAGAGCTGTTCCGCCCTTTCTCTAACACACACAAGAATAAGAAATACGAGGGGATGCTCCACACCTCAACCAAGTTTGAGCAGGTGGCCTTTGGCAGCAAACACTTCAGAGAAGAGAATGTAGACAAACTGAAGGAAAAGAAGCTTTCTTGCAGCCAGAGCGTCATTAACCTGCTGCAAAGCAAACTCTCTGGCAAAGATCccctaataaaaaaacatgttttagctCGCACCCTGCTGCAATTACAAGGAGAAGTgattcacatatttaaaatcctGAATCCTGGGATGGACAAAGCCTCAAGGATTAATTCTGTCTTGGCACTGGAGGCCACACATGGAAGTAAATATGGTGTGTTTAGAATTGAAAATATGATCGTCACACAAAGAGCTGTGTGGACCAGCTTCCCTGCCAGACTTTCTCTCTGGGTTCCTTCATGGAAGAAGCTGGATAAATGTTATGGCTCTAAAAATCACACCGTAACGATGCCATTCAAAACTCTGTTTACCCCAGTGCACCTCTTCGACACATATGGACAGATGTATTCCAACGCTGGAAATGTTGTATCTGCAGAAGCGCAATTGCTGGGACAGTGGGACGCCGCCTGCTTAGCTCTCATGCAGACTGACAGCCATATGCAGGGAAAGCGGAACCAGAATGGAGATGCTGAACAAACTGGGCAGGGGGGGAACCCGGCATGTGCTTTAGGGTGGAGGCTGGGAGGCAGTAAGGAAAAACACACTGTTATATTGGGTGAACgggaattaaaacacacagagtaCCTCTTTCTGAACTTCAGGGGCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2833 lncRNA downstream 155813 13507892 ~ 13508930 (-) True G2337
TU2820 lncRNA downstream 249587 13414861 ~ 13415156 (-) True G2324
TU2776 lncRNA downstream 427750 13233495 ~ 13236993 (-) True G2291
TU2772 lncRNA downstream 486571 13172632 ~ 13178172 (-) False G2287
TU2957 lncRNA upstream 679538 14409236 ~ 14410253 (-) True G2443
TU2958 lncRNA upstream 685681 14415379 ~ 14415673 (-) True G2444
TU2959 lncRNA upstream 688880 14418578 ~ 14419732 (-) True G2445
TU2961 lncRNA upstream 691033 14420731 ~ 14421315 (-) True G2447
TU3021 lncRNA upstream 969261 14698959 ~ 14699237 (-) True G2494
AMCG00003665 mRNA downstream 102546 13545351 ~ 13562197 (-) True AMCG00003665
AMCG00003664 mRNA downstream 149843 13509791 ~ 13514900 (-) True AMCG00003664
AMCG00003663 mRNA downstream 265896 13387807 ~ 13398847 (-) True AMCG00003663
AMCG00003659 mRNA downstream 347845 13290299 ~ 13316898 (-) True AMCG00003659
AMCG00003657 mRNA downstream 381229 13281451 ~ 13283514 (-) True AMCG00003657
AMCG00003677 mRNA upstream 608728 14338426 ~ 14354533 (-) True AMCG00003677
AMCG00003685 mRNA upstream 657857 14387555 ~ 14394904 (-) True AMCG00003685
AMCG00003686 mRNA upstream 696587 14426285 ~ 14461583 (-) True AMCG00003686
AMCG00003684 mRNA upstream 747226 14476924 ~ 14483379 (-) True AMCG00003684
AMCG00003687 mRNA upstream 798943 14528641 ~ 14531680 (-) True AMCG00003687
TU2747 other downstream 553615 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 629254 13034953 ~ 13035489 (-) True G2236
TU2508 other downstream 1586591 12076038 ~ 12078152 (-) False AMCG00003625
TU2480 other downstream 1724960 11923808 ~ 11939783 (-) True AMCG00003623
TU2225 other downstream 2560071 11103326 ~ 11104672 (-) False AMCG00003595
TU2876 other upstream 279760 14009458 ~ 14013021 (-) True G2373
TU3027 other upstream 1081088 14810786 ~ 14811331 (-) True G2500
TU3242 other upstream 1785975 15515673 ~ 15591730 (-) True G2665
TU3879 other upstream 4212879 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 4416962 18146660 ~ 18152381 (-) True AMCG00003782

Expression Profile