RNA id: TU2847



Basic Information


Item Value
RNA id TU2847
length 350
lncRNA type sense_over
GC content 0.45
exon number 2
gene id AMCG00003667
representative False

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13664743 ~ 13732039 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CATAGAGACGAGTGTAAACGCTCAGGACCATGGCCAGACTCGTGCAGCTACACAGGCGCATTGAGGGCGTTAAACACGAATATTTTAACAGGAAcaggaTTGCTGAGGAAAACAGAAGCAAAGAAAACAGTGCTGCTATTCAGATCCAGGCCTGGTTCAGAGGATGCGCAGTTCGAGCCTATCTGAGGTGACACGTTGGTTTACAGTCCTGTGAAAACAGCTTTGGACCCTATTAGATAAAGATACAGTCATAGGTTTGGAGAACTAATGGATGCCTTCTTGCATCATCAGTGTGAGAGATGTATCTTCATTAGTATGATGATCATAATCCAGAACATTAAAGGGCAGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2833 lncRNA downstream 220517 13507892 ~ 13508930 (-) True G2337
TU2820 lncRNA downstream 314291 13414861 ~ 13415156 (-) True G2324
TU2776 lncRNA downstream 492454 13233495 ~ 13236993 (-) True G2291
TU2772 lncRNA downstream 551275 13172632 ~ 13178172 (-) False G2287
TU2771 lncRNA downstream 551275 13177460 ~ 13178172 (-) True G2287
TU2957 lncRNA upstream 677197 14409236 ~ 14410253 (-) True G2443
TU2958 lncRNA upstream 683340 14415379 ~ 14415673 (-) True G2444
TU2959 lncRNA upstream 686539 14418578 ~ 14419732 (-) True G2445
TU2961 lncRNA upstream 688692 14420731 ~ 14421315 (-) True G2447
TU3021 lncRNA upstream 966920 14698959 ~ 14699237 (-) True G2494
AMCG00003665 mRNA downstream 167250 13545351 ~ 13562197 (-) True AMCG00003665
AMCG00003664 mRNA downstream 214547 13509791 ~ 13514900 (-) True AMCG00003664
AMCG00003663 mRNA downstream 330600 13387807 ~ 13398847 (-) True AMCG00003663
AMCG00003659 mRNA downstream 412549 13290299 ~ 13316898 (-) True AMCG00003659
AMCG00003657 mRNA downstream 445933 13281451 ~ 13283514 (-) True AMCG00003657
AMCG00003677 mRNA upstream 606387 14338426 ~ 14354533 (-) True AMCG00003677
AMCG00003685 mRNA upstream 655516 14387555 ~ 14394904 (-) True AMCG00003685
AMCG00003686 mRNA upstream 694246 14426285 ~ 14461583 (-) True AMCG00003686
AMCG00003684 mRNA upstream 744885 14476924 ~ 14483379 (-) True AMCG00003684
AMCG00003687 mRNA upstream 796602 14528641 ~ 14531680 (-) True AMCG00003687
TU2747 other downstream 618319 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 693958 13034953 ~ 13035489 (-) True G2236
TU2508 other downstream 1651295 12076038 ~ 12078152 (-) False AMCG00003625
TU2480 other downstream 1789664 11923808 ~ 11939783 (-) True AMCG00003623
TU2225 other downstream 2624775 11103326 ~ 11104672 (-) False AMCG00003595
TU2876 other upstream 277419 14009458 ~ 14013021 (-) True G2373
TU3027 other upstream 1078747 14810786 ~ 14811331 (-) True G2500
TU3242 other upstream 1783634 15515673 ~ 15591730 (-) True G2665
TU3879 other upstream 4210538 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 4414621 18146660 ~ 18152381 (-) True AMCG00003782

Expression Profile