RNA id: AMCG00003669


Basic Information

Item Value
RNA id AMCG00003669
length 4333
RNA type mRNA
GC content 0.36
exon number 3
gene id AMCG00003669
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 14056451 ~ 14067694 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACCGATACAGCAGCTTCTCCACTCTGTCACTGGCAGACCAGATGAGTCTCCTACAGAGCGCCTGGATGGAAATCCTCATTCTGCGCGTGGTGTACCGCTCCCTGTCCTTCGAGGACAAGCTGGTCTATGCTGAAGACTACATCATGGACGAAGACCAGTCCAAACTGGCCGGCCTGCTCGATCTCAACAACGCCATCCTGCAGCTggtaaagaaatacaagagcATGAAGCTGGAGAAGGAAGAGTTTGTCACCCTCAAAGCTATAGCGCTTGCTAATTCAGACTCGATGCATATAGAAGACGTGGAGGCCGTGCAGAAGCTTCAGGACGTCTTGCACGAGGCCCTCCAGGACTATGAAGCCGGGCAACACGCCGAGGACCCCCGTCGGGCGGGCAAACTCCTCATGACTCTTCCCCTTCTCCGTCAGACCTCCACCAAGGCCGTGCAGCACTTCTACAGCATCAAACAGGACGGCAAGGTGCCCATGCACAAACTCTTTCTGGAGCTGCTGGAGGCCAAGGTCTGACTTCACGCGCCGACCGGCCTTCCCGCCACTTACCACGCACAGAGGGGCGAGCTTAGGCCTCCACCGCGGCTCTGGAGAGCAagacaacaacagaaacaggGGGAAACCAATTGAgattaacaaattcaaaaaggCGTGAGGGACCTTGTggtaaaataaaagaataataattatcatcctAATATAAACGCtaataatgagaataatacttataatactaattcataataaattaataatgacaaaaacaaaaaagactgcACTGACTATTTAGCAGTAAGACTGTGAACCAGCTTTCAATTCTTTCTTCTGACTTTCTTAATACAGTTTTGTGCTGTCAAACCTTTTTCACAAAGAGTTCTCGCATTGAAGAGAGGAGGAAGCCAGCCCTGCCAAAGGAAAGAGATCCATTCAATGGATGCCAGCGAACTTACTTTTCTGCACCATGTCCCCTGTAAAGGAATCAAAGCGACCAGTTACTCCTCGCAGTACAGTCCGGCACGATGCATcgacacagtacagtattggGTTTCGGAGGAGCAGTCTCTTAACTAAGCGTCCAGGCGAAGGTTTGGAGCGACTGCTTCGTCACATTGCATTTTCCATCTAGATCAGATACAGCCATTTGAttccttaattgttttctttcaagtcTTCCAAATGATGCTTAGGTTGTTGTGgggggggtttgtttgtttgttagtttctttctttctcttttggtGATTTTATTGTAACCTTTTCAGGGAATAGTTGAAGCTTTAGTCACTCATGCAATACGAAAACAAAACCcgcatttaaaaagaaaaaaaagaaagaaaggaaattacaataattttgttttggttttagttgtttttattggTGTGGCTTCAGCAATGAGGAACAATAATGAAggacaatatatatacatatatatatatataaaaataaaacttttaagaaagatttttttaatgatattttgtTGATAAttgattgagattttttttgtacCAGCTTTACCACTTTCAGCCATTTTATTAATCGTGTAAACTTTTATCTTCTTCAAGCAATAGTTATTAAAAGGGAAGGTGCATATTATCACATATGCAATTTATGTTGTGTGCCAGTCTTAGCcgaggatgtttttttttgtttttttttccaaacacgCTCAAGAGCTTCCTTCTGTGATTGCAATCTACTCTTAGATTACACCTACAGCATACTGATGATATCCAGTGACTTCAAAGCAGAGTTGAAATGATGACAATGGATACTTACCAATAATATATCAGACAGACTTCTTCTTTGCTGTCTTCTAAAAACATAATGTGAAAACCATTAAGGGCAATAAGTGAATGTCACGCTCAAAGAAATGACAAGGCTGCTAACCAAATACAGAACACAGAGAACACAGAATCTCTTTCTCAGCTGTCAAGTCctagtttctctctcttcttcagaaCTAGGAACCTAATCGCAATCAAGACTGTTACAGGGTGTAAtctaataataaagaaaaactattttgctCTCCCTCACCCAggtaaaattaacaataaccTACTATAACAAATATATCAGTATTAGTAAAGGCTCCCTATACTTTCAAAACATTCTTAACCATTTTACGCATTCTTGTAAATTAAAGATTGTAAACCTAACCTAAGACCATTTAttggacaataaaataaaataaaagagagatGTTGTAGTTCAGGTTTTCACTGTTTCACGTGCTTTTCCGAATCccgtctttcttttttctttctttccttttttcttttccgtTGCATTCAGAGATTGTCTTGTTCTTCTCGTGGTGTTTAGAGTTCTCGTGTTGTATGCTTTTTTAGACACAGGGTAGAATTAGAGACAATATTGGATGTATTTTTCCTCAGGAGACTTCAGTAGTGTACTCTATACTTACTGGTTATAAGGCTCTTCCTAGTAACTTGTAGAATAACAGTTCCAAAACAAATAACTCTCTACTGACCTATAATTcagtaataattatttaaaaggagaaaaaaaacaatacataaataaataaatacaattaaaaagggaTAATTTGTGTAACAGTTTCTTGTAGAATAACAATGTATATCTTAGGtttaaaagagaaacagaagttTGAGTATTTCAGAACAATAGCTAAtgtaaactttttaaaacaaacgcTGTAAATAACGCCTTCCATTCTGGACATCTCAATTGTTGTTATATTAACTTTGCTCTTTGTGgttgctaaaaaaaataaaaaataaaaaataaattaaatggggtgggggggggaagaagagaaaagaaaactttttttggtGCAAACCAGTTTCCAAAACTACCGCTTTAACtttgtgtgctttaaaaattaaaaattaattaaataaacgaataactttaaaaaagggaaaaaaaagaggttgagggttttcttttttccttctataAATACTGTGTATCTATCATTAGCTATACAAACCTATATTATAGATTGTGGTTTCTCTGTAGAGAGCTGACCGTACTGTGATTCTAGACTTAATAATCATTCATAGCAACTCATGAGATGGTCGATAACTTGGGAGTTTATAGCTCTGATAAGTTTGGACGTTGGCacttccatttaaatacatacacaactCCTGGGAGTAAggtgctgttttcttttttgggatctgtgttttttgtttcgtttcagTGTactgctgatatatatatatatatacaggacaTAAAAGGGGATGAAAGACCTTCAATAAACAGTCTCTTTCAGAGATTTAAGCTGAATTAAGGGCAGTTGTTGGTGCAAAAGGATGAGCTGGACAATAATCGACAGATCGTCTTTCGTCTGTTGTGTTCAGGCCTCCGCAGATACTTCATTAAACATGATCACTTCACCACGTCCTTGAAACAAAAGtcattgttgtgtgtttttaatgtcgAGTTTAACGAATACAATGAACATCACCACAATGCATAATACATCACAGTTTTCCAGAGCAAAAGAAAACCGGTAAAGATGTCGCGTCCACCTTTCTGGACTAGAACTATCATGTTCAGCTTAAATACTACTGAAAATATGCGCTGTGTGTCTTTCAACACCTTGCAATGATATTTAATATAGAAAAGGTGTGTTATTTAGCCATACcaacttttatttcttttttcttttctttttttctcttttcttttttttatatttttcttatttaaagcaATATGACCGTGCGACACACAGAGGTTGCACTTGTGTTTGAATTAGATcaaaatgctgtatttattggactattttgcatttaaatgataggaataataatataaaaaaatgtacaaacaacTGCTATTTTTCTTATAGAAGAGATTATGGGTGTTGGTggttgaatttaaattatttatgcaTCAGTGTATATCTGCCGACTAATTAAAATGATTCCTGGCAGTCTTACATGCAGAAGTTgaagaaaaattaagaaattaaaaaaaaaaaaagttttaaaagcttaaaataaaataaaaaataaaaataaatccaggaGTTGCTGAAACAACCTGTAGTGAGAACCATGTCTGTAGTTTTAGATGTGCTTCACATCTGTAAAAcgattaactgtatatttttgtgatGTGTATCATAAAGTGTGCTCCAACAATATGTccatttgtgtaaatgtatttattttacattgtatatattgttcAATGCAAAAAGAGAGACCCGTGATTCTGTAACTACGATCAGTTCAGATGTGTAACTCCAATTATGCCTTTCAGGATGATGGTAGAGCAATATTAAACAAGCTTCCAGTTTTGACga

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005496 steroid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2832 lncRNA upstream 515297 13539972 ~ 13541154 (+) True G2336
TU2830 lncRNA upstream 541386 13514660 ~ 13515065 (+) True G2334
TU2829 lncRNA upstream 543453 13512600 ~ 13512998 (+) True G2333
TU2828 lncRNA upstream 543920 13512194 ~ 13512531 (+) True G2332
TU2827 lncRNA upstream 544622 13511535 ~ 13511829 (+) True G2331
TU2884 lncRNA downstream 11418 14079112 ~ 14079327 (+) True G2380
TU2960 lncRNA downstream 353037 14420731 ~ 14421310 (+) True G2446
TU3032 lncRNA downstream 784058 14851752 ~ 14866698 (+) True AMCG00003690
TU3058 lncRNA downstream 938652 15006346 ~ 15030368 (+) True G2517
TU3118 lncRNA downstream 1046935 15114629 ~ 15114837 (+) True G2563
AMCG00003670 mRNA upstream 43405 14009471 ~ 14013046 (+) True AMCG00003670
AMCG00003668 mRNA upstream 258852 13797279 ~ 13797599 (+) True AMCG00003668
AMCG00003666 mRNA upstream 312083 13737602 ~ 13744368 (+) True AMCG00003666
AMCG00003656 mRNA upstream 731229 13320203 ~ 13325222 (+) True AMCG00003656
AMCG00003654 mRNA upstream 809596 13242051 ~ 13246855 (+) True AMCG00003654
AMCG00003673 mRNA downstream 24319 14092013 ~ 14190098 (+) True AMCG00003673
AMCG00003675 mRNA downstream 124174 14191868 ~ 14204400 (+) True AMCG00003675
AMCG00003676 mRNA downstream 152438 14220132 ~ 14222904 (+) True AMCG00003676
AMCG00003671 mRNA downstream 166240 14233934 ~ 14292763 (+) True AMCG00003671
AMCG00003672 mRNA downstream 231873 14299567 ~ 14328685 (+) True AMCG00003672
TU2754 other upstream 899824 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 1013854 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 2479122 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 2565008 11490185 ~ 11491443 (+) False AMCG00003606
TU1883 other upstream 4275549 9777508 ~ 9780902 (+) True AMCG00003570
TU2954 other downstream 350822 14418516 ~ 14419732 (+) True G2440
TU3283 other downstream 1967969 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 3614123 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 4070061 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 4078966 18146660 ~ 18152314 (+) True G3108

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00024008 True 1308 mRNA 0.55 6 NC_007128.7 29798216 ~ 29877336 (-)
grasscarp (Ctenopharyngodon idella) CI01000189_02404459_02433659.mRNA True 804 mRNA 0.55 4 CI01000189 2404459 ~ 2433659 (-)