RNA id: AMCG00003671


Basic Information

Item Value
RNA id AMCG00003671
length 4269
RNA type mRNA
GC content 0.57
exon number 21
gene id AMCG00003671
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 14233934 ~ 14292763 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGGGCCAGTGGACCCGCCTCTCATATCTGAAATCCACCCAAAGAGGGCAACCATCACTTGGCAGCACCCGTCTCGGCCCAACGGTCTCATCACTCGCTATAACATCTACCAGAATGGCGAGTTGAAGGCCGTGGTGCCTGGCAATAGCACAGCATACGTAGCAGCTCATTTACACCCCTACACACACTATACAATCCAGGTGGAGGGCTGTACGGCTGTGGGGTGTTCCCTGTCTCCCGAGTCCCATTCCTTCCATACATCACCAGGGCCACCCGAAGACATCTCAGCTCCGCGGCTCTTCTCAGACACGCCCACCTCTGTGCTACTGTCGTGGGAACCTCCCCGACAGCCCAACGGTGAGGTAAGGAACTATACAGTTGAGAGGAGGCTCTGGGGCACCCAACAGGTCTCTACTGTGGTGACCGTACAAGCCCATGAGCCCCTGAGTCATTTGGACAGCTCCGCGGCCTTGAGTCCGTGGACCACCTATGAGTACCGCATCGTGGTGGCCACCCTGAACGGAGGCGTGAACAGCAGCGGCTGGACGGAAGTCACGACGAGACCCTCGAGACCCGCTGGTCTGAAGCAACCTGAGGTGTCCGTTTTGGGACCAGATGCAGTCCAGGTTGTGTGGAGCGCTCCTCTCATTTCCAACGGGGAGATTCTCCGCTATGAGATTCGCCTGCCAGACCCCCGCATTGCCATTACGAACACCTCGCTGTCCAACTACACGGTGACCAATCTGGTCCCTCACACCAACTACTCTGTCACCATCCTCGCTTGCTCTGGGGGCAGTGGTCTCATCGGAGGATGTACTGAGAGCTTGCCCACTTCGGTGACTACATTACCCACAATGCCACAGGGCCTCAGCCCCCTCTCAGTCACTGCTGTTAGTGAGTCCTTTCTTGCCATTTCCTGGCAACCGCCATCAAGACCTAATGGGCCAAATTTGAAATATGAACTGCTGAGACGAAAAACCCACCAACCACTGCTCTCCCATCCCCCTGAAGATTTGAATCTGTGGTACAATATTTACGCAGGACCCAAATTGTTTTATGAAGATAAAGGCCTTAGCAGGTTTACAACATATCAATACAAGCTGCTCGTACATAATGATGTGGGTTATGCCTCTGGGGAGGAGGTCACTGGACGCACTCTGGCTGGCATTCCCATCAGTGGAAGCACCCTGATGGCTCAGACTTTGAACCATACAGCTATAGAAGTGGCCTGGACTCACCCATCGCTGCAGGCCCTGCAGGGAGAGGTGGAGCTCTACTCACTCTTCATTAACTCATCCCACTACAACCGCTCCGTCGCGTTTCCCCCTGGCGTGAACTCCACGGTGATTGGGGACCTGCGCCCAAACACACAGTACCAGCTCTCCATCTGGGTCTTCAACGGGGCTCATGCAGTTGACAGCAAGGAGGTCTTCTCTACCACAAGTGATGGagAGCCTGAGGGGGTGTTCCCTCCCGAGGTCATTACCCTCAACAGCACAGCTGTGCGTGTCATCTGGACAGCTCCCCTGAACCCGAACGGCGTGGTCACCGAGTACTCCGTGTACGTCAACGACCTGCAGCACCGCACGGAACTGGACTCGCCGGGCTCCTTCGTACTGGGAGGCCTCTTGCCCTTCACTGTTTACAACATCCAGGTGGAGGTGTGCACTGTCTACGCGTGTGTGAAGAGCAACGGGACCCAGATCACCACAGTGGAGGATGAGCCCGAGGACATGGCGGCTCCTTACATGCATGTCATCAGCTCAAGGTCCCTCCGCGTTGACTGGACGTCCCCCGGCCGCCCCAATGGCATCATCTTGGGCTACGATGTGCACAGACGGACCCAGCGGCCCTGTGAGGAGGCCCTGCCACACCAAGCCGGGCAGCAGTGCCTGTATGTGGAGTGCCTCCGAGACCAGGGGGTTTGCGGGAGCTTGTGCTACCAGCCAGAACATCAGGTACACGGTAGTTTCAGCCGCAGTGCATCCGACCTGCaggaagggagaggggaaaTGCTCGGCCCGTACGTCTGCTGCAGTGGAGCTGTGTACAGCAGTCAGCCTGGATATGAGTGTTGCCAAGACAAATACATCCCGGCTCCTGACTTTCCCACACCGGTGTGCTGTGGTGGCCAGTTTCTCAAGCCCCTGCTGGACTTTCAGTGCTGTAGTGGGTATTATGTCAGGGTTTTGCCAGGCCAGGCTCGGGTGTCCGTTGGGCTGGGGGACGCCTGCTGTGATGGAAACCCCTACTACTCCTCAGGAAGGCAGATTTGCTGTGCCGAGACCCTCCACGATGGCTTTCACAAGCAGTGCTGCGGGGGACAGCTGGCAAACAGAGACCTGGTCTGCTGCGGCAACGAAGAGCAAGGAGCCGTGCACACGCCAGCACATGGTGTACAACAACCCTCACACCACATTTGCGGTGTCTTTTCCTCGCTGTCTGTAGGCATGGCGTGCTGTGGAGAGGAGTATGTGAACGTGTCGAGTACAGTGTGCTGTACCAGCCGCGACGGGGTCTCCGTGCCGCACCTGAAGGAGAGTGAAGCGGCACTGGGCTGCTGCGGGGCCGAACTCATCCCATCTGCAGAGGCGTGCTGCAATGGGGTGGGGTACAACCCCTTGAAATATGTCTGTGCTGACAGGTCTTCACATGGCATACAGTTCAAGCAAGACTGCAGCCCCAGCATATTGTGCCCCATCTCCATGGCGGCCGGGGCGTTCTGTGGCAAGTGTGATTTGAACCCAGCAGAGACCATCTGCACTTGGGTGAAAGGGGTCCCCTCAGCCTCCCCGTACGCAGCTGCGCAGGGGGTCCTGTGCCCCACCCCGGAGGAGCTGGTCTACTCAGGAGGGCCGAGCAGATACACCTACACAGATGCTGACCTGGAGCCCGACACTACATATGAGTACAGAGTGGCAGCCTGGAACAGCTTCGGTCGGGGGTTCAGTCCCTTCAGAGGTGGTACCACCGAGCCAGATGTTCCCCAGGGCGTGAGTGCACCAACGTGGAGCCGCGTGGATGACCGGGAAGACATCCTACACTTGGACTGGCGGCCTCCAGTGCGGCCCAATGGTCATATCAGGCACTATATAATTCTCCGGGATGGGCGAGAGAGATACCGGGGATTGGAGACCAGCTTTACTGATACAGGCGGGATTCTGCCGTACCAGGAGTATGTGTACCAGCTTCGGGCCTGCACTGTTGTGGGCTGCACTGAGAGCAGTAGGGTAGTTGCAGTGACTGTCCAGGGAGTTCCAGAGGATGTCCATCCGCCAACAGTCACCGCCCTGAGCCCCTGGGCTCTGCGGCTAAGCTGGAGAGTACCTGTGAAACCGAACGGCATCATCAGAGAGTACCACATCAATCAGACGGGCCGAGGCCTTATCCACACCGAGAGCCGCAGCGGCCTGCGTCACTCTGTCACAGGTCTCAAGCCCCATACTAACTACAGCTTCACGGTGAGCGCCTGCACATCTGCTGGATGCAGTGCAAGTCAGCCATCTATGGGCCGCACTCTGCAAGCTGCACCCCGAGGAGTGTGGTCGAGGCCGCGCCATGTGATCATCAGCTCGGCCGCGGTGGAGCTGTACTGGACCGAGCCGCTGGAGCTCAACGGGATCGTATCTCAGTACCAGCTGATCCGCGATGGCGTGTCCATATTCTCCGGCGACAGAGGAAACCGGAGCTACACAGACACTGGCCTGCAGCCCAACACCAGGTATGTATACCAGCTAGAAGCCAGCACGGGAGGAGGGAGCAACATGAGTGACAAATATGTGATTCAGACCCCGGTGTCATCTCCCGGGAGGATTCCAGATCCATATAATGTCAGCAGTATCGGACCTCGCTCCATCTTTGTCTCCTGGACACCCCCAGGAATATTTAACACCACCATGCCTGTGGACTACAGTGTTCTTTTAAACATTGCTAGTGATCGGCCATTGATCAGAGCAGCGGGTCGGGACCTGTTCCTGTTGGTGGAGGGGCTCAGTCCGTTCACAGACTACGAAATACGAATACAGGCTTGTCAGGAAGACGGTTGTGGTGTGGGCAGGGGGGCCCATGTGAGGACATCCGAAGCGTCTCCAGAAGATCTCGACCCCCCCACCGTTACAGCATCGGGGTCTGCGGTCATCGAGGTGCGATGGAAGCCGCCACAGAAACCCAATGGGGTCATAACGGCCTACTTCATTCACAGCCCCGAGTTAAAGACCATTCAGATCAGTGAAGTGTCGTTTCCTTGCAAACAGACAGTGAAGCATTGA

Function

GO: NA

KEGG:

id description
K19636 USH2A; usherin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2884 lncRNA upstream 154607 14079112 ~ 14079327 (+) True G2380
TU2832 lncRNA upstream 692780 13539972 ~ 13541154 (+) True G2336
TU2830 lncRNA upstream 718869 13514660 ~ 13515065 (+) True G2334
TU2829 lncRNA upstream 720936 13512600 ~ 13512998 (+) True G2333
TU2828 lncRNA upstream 721403 13512194 ~ 13512531 (+) True G2332
TU2960 lncRNA downstream 127968 14420731 ~ 14421310 (+) True G2446
TU3032 lncRNA downstream 558989 14851752 ~ 14866698 (+) True AMCG00003690
TU3058 lncRNA downstream 713583 15006346 ~ 15030368 (+) True G2517
TU3118 lncRNA downstream 821866 15114629 ~ 15114837 (+) True G2563
TU3119 lncRNA downstream 822942 15115705 ~ 15116972 (+) True G2564
AMCG00003676 mRNA upstream 11030 14220132 ~ 14222904 (+) True AMCG00003676
AMCG00003675 mRNA upstream 29534 14191868 ~ 14204400 (+) True AMCG00003675
AMCG00003673 mRNA upstream 43836 14092013 ~ 14190098 (+) True AMCG00003673
AMCG00003669 mRNA upstream 166240 14056451 ~ 14067694 (+) True AMCG00003669
AMCG00003670 mRNA upstream 220888 14009471 ~ 14013046 (+) True AMCG00003670
AMCG00003672 mRNA downstream 6804 14299567 ~ 14328685 (+) True AMCG00003672
AMCG00003674 mRNA downstream 36767 14329530 ~ 14335669 (+) True AMCG00003674
AMCG00003679 mRNA downstream 73553 14366316 ~ 14382592 (+) True AMCG00003679
AMCG00003680 mRNA downstream 92375 14385138 ~ 14388550 (+) True AMCG00003680
AMCG00003678 mRNA downstream 115666 14408429 ~ 14416083 (+) True AMCG00003678
TU2754 other upstream 1077307 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 1191337 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 2656605 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 2742491 11490185 ~ 11491443 (+) False AMCG00003606
TU1883 other upstream 4453032 9777508 ~ 9780902 (+) True AMCG00003570
TU2954 other downstream 125753 14418516 ~ 14419732 (+) True G2440
TU3283 other downstream 1742900 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 3389054 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 3844992 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 3853897 18146660 ~ 18152314 (+) True G3108

Expression Profile