RNA id: AMCG00003672


Basic Information

Item Value
RNA id AMCG00003672
length 3171
RNA type mRNA
GC content 0.57
exon number 7
gene id AMCG00003672
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 14299567 ~ 14328685 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGCCCGTCGGAACCCAAGAGGAGCTTCTGGTCTTCATCTGGTCCGAGGGGGCGCTGGAGTTCATCGATGCCTCTGACATCCTCCGGCCCTACACCGAGTACGAGTACCGGATCATGGCACGCAACATCAGGGGGTCCGTGGACAGCTTGTGGTCTTCGACACAAACCCTAGAGGCACAGCCAGAGGGAATGGCAGCCCCCTCGGCCCGGCCCACCAGCGCCTACTCTGTGCTGCTCAACTGGACGGAGCCCGTCTCCCCTAATGGCATTATAGCGCAGTACAGGGTGGTCTGTCAGAAACTAGGAAGTGACCCGACCTTTAACCCTTCCTCTGTCACAGCTGTCACCGTGCCGGGGACAGACAAGCAAGCCCATGTCTTCGGCTTGGAGCCCTTCACCACATACAATATCCATGTGGCGGCTGTGAACGGTGCCGGTACCTTGCCCAGCCCATGGACCTCAGTCCGCACACTCGAGGCCTCTCCCAGCGGACTCCACAACTTCACTGtggagaagagagaaaatggcCGAGCCCTTTTGCTGAGATGGTCTGAACCTTCAAGACCCAACGGAATAATCAAGACctacaatattttcaatgacAACAATCTGGAGTTCAGTGGCCTCTCCCGGCAGTTCCTGTTCAGGAGACTCGAGCCCTACACCGTGTATACCCTGGTTCTGGAGGCCTGCACGGACGCCGGCTGCACCCGGTCACCCCCTCAGCCAGTCACAACGGATGAAGCCCTTCCATCCTCGCAGGCCGCCCCTGTCGCCCATTCGGTTAGAGCCAACAGCATTGAGCTGACTTGGGCGAGACCTTCTCAACCCAACGGGAAGATATCTGAATACCAGCTCATCTGCAGAATGGCTGGGGAAGGTCAACACAGCCGCAGGGATGAGGGCAAGGTGTTGTTTACAGAAGGCAACACTGACCAGGATGGCTTCTCCTACAAGGTCACTGATTTAAAACCCTGGACTAAGTACGAGTTCAGGGTGAGAGTGTGGAATAGCGCCGGTTACTCGGACAGTCCGTGGATAACAGTGGAGACCAAGCAAGCTTCTCCAAAAGGCCTCGCAGCTCCCGCCGTGAGTCACGTGTTGGGTCACCCCCATGAAGTCTTGGTCACGTGGGCCCCTCCGCAGGAAACCAACGGGATCCTGCAGTCGTACCGAATACGGAGGGACGAATTCAATTTCCCCTTCAGTTTTGACGCCACTGTCTTCAACTACACTGACCAGGATCTAACAGCCTACACTTGGTACAGCTACACCATCATCGCTTGCACCGCGGCAGGGTGCACTAGCAGCGCAGCCACTGAGATCCGAACATTAGAGACGGCCCCCGCCACGGTGGAGCCACCATCGCTGACCAACATCACCGCCGACCAGATCAGCGTTTCCTGGTCGGCCCCGGAGATCCAGAACGGGGAGATCACCAGATACACCCTTCAGATGAACGGTGAAGTGTATTATAGCGGGAAACAGCTGCACAGCGTGGTTTCCTTTTTACAGTCTCACAGCACCTACCAGTTTGTCTTAACCGCATGTACCAATGGCGGTTGCACCTCTAGCGTGCCGAAATCCGCTCAGACGCACGAAGCACCCCCGACACACATGAGAAGGCCCTCACTGAAGGTCACCGGGTCTGAGTCAGTGGAAATTGCCTGGCAGGAGCCCGAGCATCCCAATGGTGTGATCAGAAGTTACGAGCTAAGAAGAGATGGCGTTCTCATCTACGCCGGGCTAGAAACCAGGTACCATGACTTCACTCTGCAGCCAAGTATCGAATACAGCTACACCGTGACCGCGAACAACAGCAAAGGAAGCACCACCAGCCCCGTCGCCAAGGCCAGGACGAACCCATCAGCTCCCTCTGGTGTCGCTCCCCCAACACTGCAGCCCTCCACCCCGAGTGATGTCCTGGTCATGTGGGATCCTCCCGCCCGAGCCAATGGAGAAATCGTTAACTACACCGTTTTCATATGGGATCCAGCAGAGAGCAACCACAAGACCTTCAACTTCCCTGCCTTCCACAGTGCCTTCTTAAGCCGCTCTTTTCTTTTGTCTGGCTTGAAACCATCCTACAGGTATGAAGTGAGAGTCGAGGCCTGCACTCTGCTGGGCTGTGCTTCCAGTGACTGGGCATCAGTGCGGACCCTCGAAGCCCCCCCGGTGAACCAGCCCGCACCCCTGATAGAGCTGCAGGCGGACTCAGGGGGGCTGCAGTTGGTGTTTCTGGTGTCCTGGGCCAGTCCCGCTCAGCCCAATGGAAACATTATCCACTTCGAGCTGTACCGAAGACACGCCATCAACTCTGATGCCACCTCTGAGATGGTCCTGGTTTACAAGAACCTCTCACAGTCCTTCCTGGACTCTAACCTGCACCCCTTCACAGAGTATGAATATCAGGTGTGGGCAGTGAATTCTGCAGGACGGGTAACCAGTCCGTGGAGCCGAGGACGGACGGGGCCAGCGCCTCCTGAGGGGATTTCCCCCCCGACTTTCCTCAAAGTGCAGGCCACCTCCGCCGTGGTCCACATCAGCCCCCCCGTCAAGCCCAACGGTGTTCTCTCTGAAGGGACTTCGACACAGCAAACTATCCACGGCCTCCAGCCCTTCACCACCTACACTGTGGGAGTGGAGGTGTGCACCTGTGTGCACTGCTGCAGCCGCGGCCCAGTGACCGAGCTCATGACCCAGCCATCCGCCCCTTCCCAGCAGCCCCCGCCCCGCGTCACCTCCCTCACGTCCAGGAGCGCCAGTGTGGAGTGGCGGGAGCCCAGTGCCCCAAATGGCATCATTGAAAGAGATCTTTTAGCCCATGGACTTTCATCTACTAccttattaatttgttttacagtcaGTCTACATCCATCCTCTGCAGGTCTGATCAGTTGTGTCCCCTCCTGTTTCAGCTGTGAGCTCCACATCCACACGGCCTGTCCTCAGCCTGTCCAGCCAGTCCCGGCCCCCTGTGCCCCCGGCCCCAGTGAGATGAAGTACTTCGGGAAAGGGCAGACGTACAACATCACCGGCCTCCAGCCGTACACCAGCTACAGTCTCCGAGTCGTCTGCTTCAACTCCATCGGCAGTACTGGGTCCGAGTGGATCTCCTTCACTACAGCCAAAGAGCGTGAGCCAGCTTGCCTGCCATCTTGGCCTCTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2884 lncRNA upstream 220240 14079112 ~ 14079327 (+) True G2380
TU2832 lncRNA upstream 758413 13539972 ~ 13541154 (+) True G2336
TU2830 lncRNA upstream 784502 13514660 ~ 13515065 (+) True G2334
TU2829 lncRNA upstream 786569 13512600 ~ 13512998 (+) True G2333
TU2828 lncRNA upstream 787036 13512194 ~ 13512531 (+) True G2332
TU2960 lncRNA downstream 92046 14420731 ~ 14421310 (+) True G2446
TU3032 lncRNA downstream 523067 14851752 ~ 14866698 (+) True AMCG00003690
TU3058 lncRNA downstream 677661 15006346 ~ 15030368 (+) True G2517
TU3118 lncRNA downstream 785944 15114629 ~ 15114837 (+) True G2563
TU3119 lncRNA downstream 787020 15115705 ~ 15116972 (+) True G2564
AMCG00003671 mRNA upstream 6804 14233934 ~ 14292763 (+) True AMCG00003671
AMCG00003676 mRNA upstream 76663 14220132 ~ 14222904 (+) True AMCG00003676
AMCG00003675 mRNA upstream 95167 14191868 ~ 14204400 (+) True AMCG00003675
AMCG00003673 mRNA upstream 109469 14092013 ~ 14190098 (+) True AMCG00003673
AMCG00003669 mRNA upstream 231873 14056451 ~ 14067694 (+) True AMCG00003669
AMCG00003674 mRNA downstream 845 14329530 ~ 14335669 (+) True AMCG00003674
AMCG00003679 mRNA downstream 37631 14366316 ~ 14382592 (+) True AMCG00003679
AMCG00003680 mRNA downstream 56453 14385138 ~ 14388550 (+) True AMCG00003680
AMCG00003678 mRNA downstream 79744 14408429 ~ 14416083 (+) True AMCG00003678
AMCG00003683 mRNA downstream 211859 14540544 ~ 14548128 (+) True AMCG00003683
TU2754 other upstream 1142940 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 1256970 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 2722238 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 2808124 11490185 ~ 11491443 (+) False AMCG00003606
TU1883 other upstream 4518665 9777508 ~ 9780902 (+) True AMCG00003570
TU2954 other downstream 89831 14418516 ~ 14419732 (+) True G2440
TU3283 other downstream 1706978 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 3353132 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 3809070 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 3817975 18146660 ~ 18152314 (+) True G3108

Expression Profile