RNA id: AMCG00003673


Basic Information

Item Value
RNA id AMCG00003673
length 5685
RNA type mRNA
GC content 0.55
exon number 29
gene id AMCG00003673
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 14092013 ~ 14190098 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATTGGCTCCTGCTGCGGAAAGATGCTGTGCTATTAGTTTATACCATCGCCTGTTACATCTCCACCCGCCTAGTCAGCCCGCAGGGCCATTTCCCCAAGCTTGAAAATATAGGGGCTTATAAAAATGTCACCACGGTGCCATCCCAGTCATCATGTGGCGAACCGGAGAGGAATGCTTTCTGTCAGAGTACCGTGGCGAGGGAGAGTCTGCTTACCTGCACCCAGCAGTTGTGTGTCCAGAAATGCGCCTACCGGTCCTCCTCTCCATCCTACACGGACCTTTTTTCCGCAGGACTCGGGACCTGCGTAACTGAAGACGGCCACAGCCGGAACCCAGGGGCGCGGGGTCGGGAGACGAGCTTTATTTTTCGGAACCAAAGGGATTGTTTTACCTCCCCTCCTCCACAGAACCTGGGACCCACCGGTTCATTCACCTTAGGAGTGTGGCTGAAACCCGAGCTGGGGACTGTAATGACTGTGATTGAAAAAGGTATCGGAGGGCAGGTAGTTTTCCAACTGACCATCTCCGAAGAAGAAACTCAGTTCCACTATGGCCTGGCGAACGGTCTGCAGCAGGCTATGGTGGTGAGGACACTGGGACGGATTCCTCCTGGACAGTGGACACACCTGGCCTTACAGatGCGTCTGTTTTACCCTCCATCATATCACAGTGCAGCTGACAAGTTTTGGCAGATCCCAGCATATAAAAGCGAGCTGGAGACGGAaagttcaaaatgtaaatgcgAAGAGGCGTTTTCATCCTCAGAGACAAACCGGCCACTTCCTGGCGAGAACAACATGCCCAGGCTAGAGATAGTGGAAGTGTTTTCAGGGCAGGTGCCTTACCTCCACACCCAGACGGAGTGCCGCTGTCCCAGCAGTCACCCGCGGGTGCACCCCTTAGTGGAGAGGTACTGCATCCCCAACGGGGCCAACGACACCACCAATGACCGGGTCCTGCGCCTCAATCTGGATGCCCACCCCCTCCACTATATCAATGACAATGACATTGGGACTTCGTGGATCTCGTCTGTGTTCTCTGACGTGGCCCAGCTGGAGAATGGAGTGACCATCACCTTTGATTTGCAGAATGGAGAATACCAGGTTTTCTATGTTATTCTACAATTTCTCAGCCCACAGCCCGAAGCTGTAAAAATTCAAAGGAAGCGGAGCAGTAGCTCAGAGTGGCTGGACTGGCAGTACATGGCTAAGAACTGCAGTGTCTTTGGAATGGAAGATAATGCACCTTTGGAGAAGCCAGACTCTGTCAACTGCCTTCAGTTTCCAAGCAATATCCCCTACTCCCGTGGCAATGTGACTTTCAGCGTTCTCACCCCAGAACCAAATCGACGGCCAGGATACAACGATTTCTACAACACTCTGGCACTGCGGGACTTTGTCAAAGCTTCACATGTGAGGATCCAGCTGCAGGGCCAGTACCACACCGACCAGCCCACTGTCAGTGCCAGGCACAGATACTACGGAGTGGATGAGATTACCATTAGTGGGAGGTGTGACTGTCACGGCCACGCGGACCACTGCGACACCAGCCTCAACCCCTACCACTGCTCCTGCCTGCCGGAGAGCCACACGGAGGGAGATAATTGTGAATGCTGCCAGCCCCTCTTTAATAACAAACCGTTCCGCCTGGGAGACCAAGTCCAGGCCTACAATTGCCAGCCTTGCCAATGCCACGGACACGCAGACTCGTGCCACTATGATCCAACTCTGGACAGCTTTCCCAATGATCATTTCCGAGGGGGTGGAGGCTTGTGTATCAACTGCCAGCATAACACCACAGGAAGGAACTGTGATGTGTGCAAGAGTCTATTCTTCCGGGAAGTGCATGCCCGTCTCTCGGCGCCGGATGTGTGCAAACCCTGTGACTGCAACGAACTGGGCACCGTTAACGGCAGTCGTCTGTGCAGCGGGTTCCTCAGTGCTGCAAATCCAGATGGGTGTGACCCTTGTAACTGCGACCGGAATGGTTCCCGGCACCAGTTCTGCAACCCATTCACCGGCCAGTGCGAATGCAAAGACAGAGTTCACGGGCTGCTCTGCGATAGCTGCGCCAAGAACTTCTATGGACTGAACACCACTGGCACTTGCTGGCCGTGCGATTGCAACCCACTGGGCACCATCCCTGGCACTGTGTGTGACGCTTGGACGGGCCAGTGTTTCTGCAAGCCTCACGTGGAAGGCCGGCAGTGTGATGTGTGCCTGGAGGGGTACCACAGTCTGCGACAGAGCAACTCTCTTGGGTGCATGGCCTGCAACTGTGAAACGAGGGGAACTGTGAATGGCTCCACTGTTTGCAACCAGACAACAGGCCAGTGTCCATGTAAGAGCAGCGTCCGTGGCCCGCAGTGCAGCCGCTGTGCCCCTCAGTCCTTCAATCTCACCTTCAACAGGGACGCAGGTTGCCAGCCGTGCCAGTGTGATCCCATGGGGACCGTGTCCGGGACCATGTGTGACTCTATgagtgggcagtgtgtgtgtctgccccCCCGACAAGGCAGGAACTGCGAAGGCTGTAAGCCAGATGTGAAGAGTGTGGTTGTGATCCAGCAGGGAGTTTCAATGGCACTTGTCACCCAGACTCTGGGAACTCCATCTCAGCAGCCCCCCCCTGCCGGGCTCATGCTAACCTCCTCCGCAATCGGCCTGTCGTGGAGTCCCCCGGATTCCCCCAACAGCAATGTCCTCACATTCAGACTGTACAGGGACGCCACCGAGATCTACAGAATTCAGAAACCGTGTCCGTTCGAGTCCCAAGTCTTCAACGACACTGGTTTGTCACCGTTTACCGTTTACTCGTATCACGTGGAATCCAGCAACGTTCACGGCCAGACGAGAAGCCCCTCCGTGAGCTATAGAACCAGAGCCGGCGTGCCCCAAGGAGGACCCCATCTCAATCTCCTGGGCCGGGCTGGACCAAGCAGTGCTTCTTTTAACTGGACAGTCCCTCAGAACACGTCTGGTCCCATTGAGAGATATGTACTGATGTCAACCAGGGAAGGAAACCAGGAGGCTCGTGTGCACTATCAGGGGCCCCAGACCTGGGCAGCGGCCAGTGGCTTGTCACCCTTCACCAGGTACAACTTCTCTGTCCAGGCCTGTACCAGTGGAGGCTGTGCGGAGAGCAGCCTCCTCAGCCTGGTCACAGCCCAGATCCCCCCCGAGGGCCAGGCCCCTCCCAGGGTCAGCACTGTGGGGGCCACAGAGCTGCACGTAGAGTGGGACCTGCCCGCAAAGCCCAACGGAGTTATTATAAGATATGAGCTGTATATACGTGGGCCAACAGAACCCGACCAGGAGTTTGCTCTGCTGGAAAGGAGGGTCTTCTCTGACAGCGGGTGGCTGAACCCACAGTCGATGGTCACCTCTGCCAACGAGAATGCCCTGAGTCCCCCGCAGAGCAGCACCACAGTGACCGACCTGGAGCCGTTCTCCACCTATCAGTTCAAAGTGTTTGCAGTCAACATGGTGGGCAGCACCCTGTCCGAGTGGGCATCTGGGAGGACAGATGAAGGCGTCCCAGCGTTCATGCCACCACCTGAAGTGTCTCCACTTTCATCCTCCTCTCTGAATGTGACCTGGGTCCAACCAAACGACACTTCCATGAGGGGGGTGGTCACAGAGTACAGGGTCAATCTCCATCAGGAACAGACCACCAATGAGTTTGTCCCACCAGTCCTTTCTCAAGTTCTTTATATGGCTTCGTCACATGAGCGGATGTATGTAGTGGAAGGCCTGAAACCTTACCAAGTCTACAACTTCACGATTACTCTCTGCAATCGGCTTGGGTGTATCACAAGTCGGCTGGCCTCTGGGCAAACACTAGCTGCTGGTATTAAGCTGAGTTTCAGGACCAGGGCAAGGGAGGGACTACTTCTCTGTGCCATCGCCCCGGGGGAACAAGAAGAGTACATAGCCTTGCAGATCCACAATGGCCGgcccttctttctttttgaccCTCAGgCATCCGCGGTGGCCGTCAGTCCGAACAATGATGGCGGGAAGCTCTATAATGACAACCAGTGGCACCATGTGATCGCTACGAGAAACCAGGCCGTGGGAATGATCATTGTGGACAATCAATACAGAGGGTCTGAGGTTGCAACTAGTGGGAGTACCATCATTGGAGAAAATACTGGAGTCTTCATCGGTGGCCTTCCAAACGACTTTCTCATGCTGAGAGAAGATACAGGAGACGCCAGACTCATGCACAGGGCCTTCTTGGGCTGCATCAGTGACGTCTACATCAAGAAGAGCGACTCTCCAGTTGAGTCTTGGGAGCCGTTAGACTGGGGGAGCGCTGAGCAGAGAGCTGGGGTCTATTGCAGCTGGGAGGGCTGCCCCGCTCACACAGTGGAAGGAGCTCATTTTTTGGGACAAGGAGGAGCAGATTTTGAGATTACCTTCGATTTGCGAACAGATCAGCTCAATGGCCTGCTTCTGTTTGCGTACAACATGGAAGGACAAGGCTACCTGGCTGTGGAGCTGCAAAGTGGCACTCTGAGCTTCACTCTCAAGTGGAGCCACTACCTCACACAGGTCAACCTGTGGGTCGGCCTGTCGTACTGCGATGGGCGCTGGAATCGCGTGTCCCTGAGGAAGCAGGGTCCCACAGCCGGGGCCACCATGAATCAGCTTTCAGAGCAAGTGTCGGGGGCGACCCCAGAGGACCTGCATATAAACTCCCCCATTTACCTCGGGGGGATCCCAGCTGACCTGCACAGTGCCTTCCCCAACCTGGGCCTGCAGCAAGGTTTTGGTGGCTGTATAAAGGATGTTAAATTCACACGAGGGGCTGTCGTAAACTTGGCGGCTGTGTCCAGCAGTGCTGTCAGAGTCAATCTGGATGGATGCCTGTCAACTGACACCGCTCTTAACTGCAGGGGAAATGACTCCATTCTGGTGTATACAGGCGTGGAAAGGCTTGCGAAGGACCATGCTCTACAGCCATTCACGGaGTACCTATACAGGGTCACTGCTTCCAGTGCAGGTGGCTCGGCGTCCAGCCAGTGGCAGCGAGGCCGGACCCGAGAAGCAGTTCCACAAAGTGTGCTGCCTCCCTCCAGAGTTCGCTGTGTAAATGGTTACAGCGCCGAGGTGAGCTGGGACGAGCCGGCTGGGGTCAGAGGTGTAATTGAgaagtacattttgaaagcGTACAATCGGGACAGTCCCAGTTTGCCCCCAATCACTGCCGAATTCCCAGCCAGCCCCAACCTGACAGGCAATTTAACTGGCCTGGCTCCTTTTACAAACTACAGCGTCACCCTAACAGTGTGCACCCTGGCTGGCTGCTCTGAAAGCCTCCATCGCAGGAACATCAGCTCTCCACAAGAGGCTCCCAGAGATGTTCTCCCCCCAACAGCAGATTCCTATCCCAACTCCTTGTCTTTGTCCTGGGGTCTCCCACTACACCCCAATGGCATAATTACAGAGTACATGCTGTACAAGGATGACAATCTGGTCTACAAGGGCAATCAGACCGAGTTTAATGCCACCGGTCTGGGGGTGTTCTCTCCACACTGGTTCATCCTGACTAGCTGTACGATGGCTGGCTGCTCCAACAGTTCCCAGGTCACGGTGTTAACAGCCCAGTTGCCACCGAGCCACGTGGACCAGCCCGTTCTGACTGTTTTGGACTCCAGGAGCATCTATGTGCAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2884 lncRNA upstream 12686 14079112 ~ 14079327 (+) True G2380
TU2832 lncRNA upstream 550859 13539972 ~ 13541154 (+) True G2336
TU2830 lncRNA upstream 576948 13514660 ~ 13515065 (+) True G2334
TU2829 lncRNA upstream 579015 13512600 ~ 13512998 (+) True G2333
TU2828 lncRNA upstream 579482 13512194 ~ 13512531 (+) True G2332
TU2960 lncRNA downstream 230633 14420731 ~ 14421310 (+) True G2446
TU3032 lncRNA downstream 661654 14851752 ~ 14866698 (+) True AMCG00003690
TU3058 lncRNA downstream 816248 15006346 ~ 15030368 (+) True G2517
TU3118 lncRNA downstream 924531 15114629 ~ 15114837 (+) True G2563
TU3119 lncRNA downstream 925607 15115705 ~ 15116972 (+) True G2564
AMCG00003669 mRNA upstream 24319 14056451 ~ 14067694 (+) True AMCG00003669
AMCG00003670 mRNA upstream 78967 14009471 ~ 14013046 (+) True AMCG00003670
AMCG00003668 mRNA upstream 294414 13797279 ~ 13797599 (+) True AMCG00003668
AMCG00003666 mRNA upstream 347645 13737602 ~ 13744368 (+) True AMCG00003666
AMCG00003656 mRNA upstream 766791 13320203 ~ 13325222 (+) True AMCG00003656
AMCG00003675 mRNA downstream 1770 14191868 ~ 14204400 (+) True AMCG00003675
AMCG00003676 mRNA downstream 30034 14220132 ~ 14222904 (+) True AMCG00003676
AMCG00003671 mRNA downstream 43836 14233934 ~ 14292763 (+) True AMCG00003671
AMCG00003672 mRNA downstream 109469 14299567 ~ 14328685 (+) True AMCG00003672
AMCG00003674 mRNA downstream 139432 14329530 ~ 14335669 (+) True AMCG00003674
TU2754 other upstream 935386 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 1049416 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 2514684 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 2600570 11490185 ~ 11491443 (+) False AMCG00003606
TU1883 other upstream 4311111 9777508 ~ 9780902 (+) True AMCG00003570
TU2954 other downstream 228418 14418516 ~ 14419732 (+) True G2440
TU3283 other downstream 1845565 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 3491719 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 3947657 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 3956562 18146660 ~ 18152314 (+) True G3108

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00024003 False 15711 mRNA 0.53 72 NC_007128.7 29376854 ~ 29771639 (-)
grasscarp (Ctenopharyngodon idella) CI01000189_02167284_02313164.mRNA True 10932 mRNA 0.54 51 CI01000189 2167284 ~ 2313164 (-)