RNA id: AMCG00003675



Basic Information


Item Value
RNA id AMCG00003675
length 678
RNA type mRNA
GC content 0.59
exon number 6
gene id AMCG00003675
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 14191868 ~ 14204400 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCCGCTGCCACCACGACGTGGAGAGTGCCGATGGAAAGGAACGGAGTCCTGGAGTATTACACGCTGTACCTCGCCGCCCAGGGACAGGAGTTCGCCGTGGCGTACAACAGCTCTGAGCTCTTTGAGGACTACACAGTGCGCCACCTTGTCCCAGGGACCAGCTACGCCTTCCAGATTGCCGCCTGCACAGGTGGGGGCTGCACACTCAGCCCTCCCAGCACGGCCCGGACAGACGAGAGCACCCCTGAGAATGTGCCGGCCCCCAGTGTCCAGTCGttctcctccacctccttcAACGTGTCCTGGACAGAGCCACAGAAGCCCAACGGAATCATCAGCAGCTACGGGCTGTACATGAACGGCATCCTGGTGCAGAACTCCACGTCTCCTCGGTTCTACATCAGCGGCCTGTCAGCGTGGAGCCACCACAGCTTCAGAGTCCAGGCCTGCACTGGCAAAGGCTGTGCCCTGGGTCCCCTGGTGGAGAGCCGGACTCTGGAAGCTGCACCAGAGGGAACGGTGGATTTGGAAGTCGTGAGTGAAGGATCTCGCTCTGTCAGAGCCAAGTGGATGAGTCCAGCCAGGCCCAACGGCCTCTTAACTTACACCCTGCTCTTCAGCGGCATCTTCTATCAACAGGAAGGAAAATGCATAGAATTTCAGCTCAACGTTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2884 lncRNA upstream 112541 14079112 ~ 14079327 (+) True G2380
TU2832 lncRNA upstream 650714 13539972 ~ 13541154 (+) True G2336
TU2830 lncRNA upstream 676803 13514660 ~ 13515065 (+) True G2334
TU2829 lncRNA upstream 678870 13512600 ~ 13512998 (+) True G2333
TU2828 lncRNA upstream 679337 13512194 ~ 13512531 (+) True G2332
TU2960 lncRNA downstream 216331 14420731 ~ 14421310 (+) True G2446
TU3032 lncRNA downstream 647352 14851752 ~ 14866698 (+) True AMCG00003690
TU3058 lncRNA downstream 801946 15006346 ~ 15030368 (+) True G2517
TU3118 lncRNA downstream 910229 15114629 ~ 15114837 (+) True G2563
TU3119 lncRNA downstream 911305 15115705 ~ 15116972 (+) True G2564
AMCG00003673 mRNA upstream 1770 14092013 ~ 14190098 (+) True AMCG00003673
AMCG00003669 mRNA upstream 124174 14056451 ~ 14067694 (+) True AMCG00003669
AMCG00003670 mRNA upstream 178822 14009471 ~ 14013046 (+) True AMCG00003670
AMCG00003668 mRNA upstream 394269 13797279 ~ 13797599 (+) True AMCG00003668
AMCG00003666 mRNA upstream 447500 13737602 ~ 13744368 (+) True AMCG00003666
AMCG00003676 mRNA downstream 15732 14220132 ~ 14222904 (+) True AMCG00003676
AMCG00003671 mRNA downstream 29534 14233934 ~ 14292763 (+) True AMCG00003671
AMCG00003672 mRNA downstream 95167 14299567 ~ 14328685 (+) True AMCG00003672
AMCG00003674 mRNA downstream 125130 14329530 ~ 14335669 (+) True AMCG00003674
AMCG00003679 mRNA downstream 161916 14366316 ~ 14382592 (+) True AMCG00003679
TU2754 other upstream 1035241 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 1149271 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 2614539 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 2700425 11490185 ~ 11491443 (+) False AMCG00003606
TU1883 other upstream 4410966 9777508 ~ 9780902 (+) True AMCG00003570
TU2954 other downstream 214116 14418516 ~ 14419732 (+) True G2440
TU3283 other downstream 1831263 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 3477417 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 3933355 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 3942260 18146660 ~ 18152314 (+) True G3108

Expression Profile