RNA id: AMCG00003682


Basic Information

Item Value
RNA id AMCG00003682
length 3497
RNA type mRNA
GC content 0.48
exon number 21
gene id AMCG00003682
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 14564528 ~ 14580910 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAGCTTTCGCGCATGCGCGGATGTGCTACTTCCTAAACTGAGTGTGAGCCCATGTGAGCGGCAGCAACACGGATGAGAGGCAGCTGTGCGTTTCTGCTCAGGCCTTTTGAACACGCAGGCTGAAGATGGCCACAACGCAGTGGACCAGTGTGTCTCCTGCCGTGGCTGTCAATGCCACCAACTGCTTCAGCAAGAAAGACGAGAGCCCAGAGCTGCAGGGGTTGAGGTTTGGCGGTGTCCCTGTGGTACTTCTGATGGATTTTGTCTTCTTCATAATCCTGCTGGTGATCTTTGCCATCATTAGGAAGACAGTGTGGGGATTTGGGAGACTTGCGATGGTTTTCACAGAACCGTCACACAGGAGATACGCTAGGCTGTCCTCTTCCATGTCAACATCAGAGGAACCTGAATACCGGAagGGGTTCTTCTCCTTGGTGGCGTTTGTGGTCCGACTGGATGCAGACAAGATTCAGGAGAAGTGTGGGAAGGATGCCATCCTGTACCTTTCCTTCCAGCGGCATCTCATTTTCCTCCTGGCCGTCTTCACCGTCATGTCTGTGGCCATTATCCTGCCCGTCAACCTCTCCGGAAACCTGTTCGAAGCTGACCCTTATAATTTTGGCCGAACAACAATAGGAAATCTGCAGAAAGGCTACAACCTTCTATGGGTACACACTGTGTTTGCTGTGCTCTACCTCATCCTCACAGTGATCGCAATGAGACATCACACCTCTAATATGAAAAGCATGGAGAAAGACACCGTAACGCACAGCTTATTTATTACTTCCATGCCTGAATATGCAAGTGAAGATTCTATCAAGATACACTTCAGGACAAGGGCGGAGAAAAACCTGGTGTACTACAGAAAATTCCTGGAGCGCGAAGGAAAGCGAGCTCTAATTAACCCAAAGCTCTGTGGTTATCCCTGCTGTTGCAAAACGAAGTTCTGTCAGGAGGTGGATGCCATTGATTATTACACTGACAAGGAGAAAAAACTGGATGAGGAGCTTTCTAGTAGAAAGGAGGATGTGTACGGCAAGCGTCTGGGTATGGCCTTCGTCACCCTGCAGAATGAGGCAATGACATCCCTTGTGCTGAAAGACTTCAATGCTATAAACTGCACTGGGTGCAAATGTCCCCAGGAGCCCCAGAGTTCGTCCTACATCGAGGCCCTCAAAGTGAAGCAGTGGGATGTCAGCTATGCTCCAGATCCCAAAAATATTTACTGGGAGAACTTGTCAACTCAGGGGGTCCGCTGGTGGTTCAGGTGCCTCATCCTCAACTTCCTGCTCTTCCTTTTGCTGTTCTTCCTCACCACCCCCTCCATTATCATCACCACCATAGACAAGTTCAACATCACCAAGCCCATCTACTATCTGAATAACGCGGTTATCAGCCAGTTCTTCCCCTCGTTCCTCCTCTGGGCGTTCTCCTCTCTGCTGCCAACCATCGTCTATTACTCCACGTTTGTTGAAGCCCACTGGACCAGTTTAGATCTCTTCTTTCAATGGCTGTTTGACACCAAATTTCTGGCACTGGCCAAGCTGAGGTTTGAGTGTGTGTTCCTGCCCAACCAAGGGGCCTTCTTTGTGAACTACATCATCGCGGCTGCCCTCGTAGGGAGTGGGATGGAACTCCTCCGTGTGCCAAATCTTCTGATCTTCAGCATCCGCATGGCCATGGCGCGCTCGGCCGCAGAGAGGAAATTGGTTGAACAGAACCAAGCCACTGAGTTTGAGTGTGGAGCCACGTATGCCTGGATGCTGTCGTCCTTCACAGTGATCATGGCTTACAGTATCACCTGTCCGGTTATTGTCCCCTTTGGTCTGCTCTACATGATTTTGAAGCACTTGGTGGACAAACACAACCTGTACTTTGCTTACCTGCCCGCCCCTCTGGACATGAAGATCCATTACACAGCGGTGAACCAGGCCCTGTCCGCGCCAATCATTTGCCTGTTCTGGCTGTACTTCTTCTCCGTGCTGAGGACAGgtTTTACAACCGACACGTCCCTGTTCACGCTAGTGGTTTTGGGCGTCACCATTTCGATCTGCATCGGTTACACCTGCTTTGGACACTTTAAGTACCTGAGTCCACATAATTACAAGATAAACGAAGAAGTAGACGGAACGCACAACGTGAATCCGCAGCCTGTCTATGTGCCCAAGGTGCTTCAGTCAGCACCCAGCCAACCTGCCTCCCTGGACCGCAAAGTTCAGTCTTATGGGGCTGTGGAAACCAGTCCCTCTCCATCAGACAACCCAGGCAGTGCCTCGGTGCCAGAGCCAGGTCCGTCACACGCCTAGGACACATTTCTGTCTTCCTCTACAGTGCTGTGGACGGCACGAAGGGCCACCGTATCcacaacagtaacaataatgGAAGGGGAGCCCAGTTTAAGGCTTTGTTCTTTGAAATGGATGACTCTGAGGCCTTTGCTACCAAAGTACAATTTGCTGCACTCCTTCCAACTCCACATAAAGTACAGGTGATTCATCAGAAACAACATTCATATGAAAACACTAAGCACCTTCTGCTAGGCTTTTAGGCAGCACAGTAGTATCCTCAATAACTTAATGATCTAGATATACGTTTTATATAACTGCCCTAGCTACATATTTTCTCTTTCGTGTTTTCCAAATTGGCTGCCATTCATAGATTCTTAGAGCACGCAGCTGGGACCGATGGACAGGACTGTGGGGTCTTCGTCTTCTCTCCACACTGCCGTAACGAGGGATGAGAAGCCCTGGCAAGTTGCAACTAGTCCTGGCAACGTCTTAGTTGAATTGATGTTGTCCAGATTTGAGTCCagggctgcacacacacactgacattcctgtttCCTTTCCATTGGGGACACAACATCTGTTTTTATGGAACCCGTATTGGTTTTGATGTTACTAGAAGAGCAATGCCATGATGTTCTGTGACAAGAGTTGGAACAGTCTACACTgtccattataaataaatgattcacTCACATCGGGAACACACTACTAGTCCTGCCACTCAGTCACTGTTATACATAAACGGCTGCGGTTTCGCCAGCTTGACGTTACGCTCTTGcacttttaaagaaatgttttaaatacaagacCACAACCTTCACGCTTTACATGCGGTGGGTACAGGGAGCCGGGTGTCACTCTCACTGCTGTTACGGTCGGTGACATGCAGACTTTATAGAGAGGAAGTGAGGCAGAAATTGTACTCAGTCTGGATAAACCAAAATTAGTTTTTATCAACAGTGCTTTTAGTtatttgcctttatttttaacacacgttgtgtgttagctgggacacattttatttcacaggcTACACAGAAAATACATCTGTAATGTTTCAGTAGAATAACACTGTTCATGTGTTAATGTTTTCCGTTTTAAAGAAACTAAtcctctttaaaaacaaaaagaaactaaCTACtcttattgttatatttgttcgatatgtttaatgtttaataaagaaCTGGACGTTTTTATTCTGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2960 lncRNA upstream 143218 14420731 ~ 14421310 (+) True G2446
TU2884 lncRNA upstream 485201 14079112 ~ 14079327 (+) True G2380
TU2832 lncRNA upstream 1023374 13539972 ~ 13541154 (+) True G2336
TU2830 lncRNA upstream 1049463 13514660 ~ 13515065 (+) True G2334
TU2829 lncRNA upstream 1051530 13512600 ~ 13512998 (+) True G2333
TU3032 lncRNA downstream 270842 14851752 ~ 14866698 (+) True AMCG00003690
TU3058 lncRNA downstream 425436 15006346 ~ 15030368 (+) True G2517
TU3118 lncRNA downstream 533719 15114629 ~ 15114837 (+) True G2563
TU3119 lncRNA downstream 534795 15115705 ~ 15116972 (+) True G2564
TU3126 lncRNA downstream 547686 15128596 ~ 15130200 (+) True G2571
AMCG00003681 mRNA upstream 6335 14555990 ~ 14558193 (+) True AMCG00003681
AMCG00003683 mRNA upstream 16400 14540544 ~ 14548128 (+) True AMCG00003683
AMCG00003678 mRNA upstream 148445 14408429 ~ 14416083 (+) True AMCG00003678
AMCG00003680 mRNA upstream 175978 14385138 ~ 14388550 (+) True AMCG00003680
AMCG00003679 mRNA upstream 181936 14366316 ~ 14382592 (+) True AMCG00003679
AMCG00003688 mRNA downstream 27076 14607986 ~ 14617192 (+) True AMCG00003688
AMCG00003690 mRNA downstream 272371 14853281 ~ 14866758 (+) False AMCG00003690
AMCG00003691 mRNA downstream 415987 14996897 ~ 15005277 (+) True AMCG00003691
AMCG00003696 mRNA downstream 438498 15019408 ~ 15054371 (+) True AMCG00003696
AMCG00003695 mRNA downstream 484106 15065016 ~ 15096524 (+) True AMCG00003695
TU2954 other upstream 144796 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 1407901 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 1521931 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 2987199 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 3073085 11490185 ~ 11491443 (+) False AMCG00003606
TU3283 other downstream 1454753 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 3100907 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 3556845 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 3565750 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 4787283 19368193 ~ 19369266 (+) False AMCG00003828

Expression Profile