RNA id: AMCG00003685


Basic Information

Item Value
RNA id AMCG00003685
length 2442
RNA type mRNA
GC content 0.46
exon number 9
gene id AMCG00003685
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 14387555 ~ 14394904 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCAAAATGGCGTCCTCGGCGCGAGACGGGGGCAGAGGAGCACCAGCGCCGTCCACAGCGCGTGAACCGGGACTgaacaaaggctgtgaataacTGGGTCACGTGTGACAAACCACGAGAGATTTGAATTTTACTGAGCAAGGATGGCATTTGCTCCCACCAAAATGATGAATGGCTTGAAGATGCAGACAAAGATGAGCACCTGGACGCCCTTAAACCATCAGCAAACTAATGACAAGGTGTTTGAAGAAAGACGGGATCTGCTTGGCAAGTGGTTTGACAAGTGGACGGACTCCCAGCGCAAGCAGGTCCTGCAGGACTTTTTCCAGAGGTGCTCCAAGGCTCAGCTGCGCTTCGCCGGTCAGGTCGTGCACAGCCGAGTCCCAGAAGAAGCCCTCGACTTCACCACTCAGCTGCCCCGGGTGCTGGCGCTCTACGTGTTCTCCTTCCTGGACCCCCGCAGCCTGTGCCGCTGTGCGCAGGTGAGCTGGCACTGGAAGCATCTGACAGAGGTGGACCAGCTGTGGATGCCCAAGTGTCTGCGACTCGGCTGGTACATCAacttcacccccaccccctttgaGCAAGGCGTCTGGAAGAGGCACTACATAGAGACGGTCAAGGAGCTCCACGTCAGTCGGCCGAAGACTCCCCAGAAGGAGCAGTTTGTTGTGCCAGAGGTGAGGCCAATCGGCAGTGAAGACCCGGCCCTGACAGCGAGCCGCTCCAGGCTGGTCCAGTCCGCAAACCTCTCCCTGAAGGGGAAGAGCGCCGGAGTGAGAGGCGCGGGGCAGCCGCCATGGAGGGGCTCTGACAAGCACCCGACTGACACCCTGCGCTTCAACTACCTGGAGAACTTCGACCCCATAGAGCAGGCACGCCTGGCGCAAAGCAAAGGCAAGGGGACAGCTACCAATCTTAGCAaaccagaaaacacaaaaaagaaacccCTCTCTGATTCAGCCTACAAACTGCGCAAGGCGAAGTCACTCATGTTCCTATCGCCGGATTCGAGTTCTGCCCAGCAGGCACACGGCCGACCGAACTGGGCGACACACCAATCCGAGGAATACCCCATCACCAAGGCAACTGCCAAGACAATGGCACAGAAGACAGAGTGGAATGCCGGGATGTATCCCCGTCCTGTGAGACCCCCGGTGCCCAAGATGAGTGAGAAGGGATTGAGGGCGTCCCAGCGCACACAAAGGAGCTCCCCATCAGTGGCACTGTTTGAGGGGCAGCCATGGAAAATACCTGCAGAGCACGAATCTGAAGAAGACTGAGCCGAGAAAGCCTGTCCAGAGACAGCACGGCCCCTAGAAACGCCATCATGACTGCAGCTCTGGACAAGGTATTCATTTTGATGGATAAGGGAGTTGACATTTCTTGGagacaaactttttttcttgttttgtattaatacagtGTTTAATGAATAATTTGCTGGTTTTAAATCCAGTGGACTGTAGCCCATTGATGATGTTGGTTAACCAATTAGCATATGATCTATTTCAAAGAGACCAAAACAGATCAAATCTATGTGGATCTTTTCaatcttattttgtaaatattttcagcATGATTTCAACCTCTCTAACATCTGTAGTCAGGTTTTACATAAAGTCTAGTAATTAAAGATTGAGGACTGTCTGTAACCTGACAATAGCATCCATACTGCTGTAATGAGTAACtttacaacaaataataaaaaacactttattcttgaaagcattacaaaaacagtAATCTACATCAATTACCTTTTtcatcaatttaaattattgcaaaacaaaaacagtggtTAATTCAGATATAATGTATAGTGGCTTCAAGTGATGTAGTTAAAGTCTTTGGTCTTCAAGGAAGGAATGATTCTACTGATATACAATAAAGGAGTTAAGTAAATCATGGGGAAACCTAACTGACAATGCTTTTGAGGTTTGTTTTGAATGAGACCTTTAAATCACTTCaagtcaatatttgttttctccaaTTGTAGACTGTATTGAGTTCAGCTGAGCCGACAAAGAAGTTTGGCTTTAAGATAAAGAAGTGATCTATCTACAGTTCAGTCAACTGattatattttgtgtgaatATTTCAGCGCATAATCACAATATGTTccataaggaaaaaataaaagtttatattcTGACTAAAGTACTGttcacatttgcattatttagaTGTATTTGTAGTCAGTCTTCAAACCTTCAGTGTGCAGTAAATTCACATGGTCACCTCAATCCCTGCTGTGACTTTTTGAATCCTTAAATAAAGTTCCCTGAAGTTACAGTGGCAGCTGCATTCATCTGCAACAGGCAGGCAGATTTCTTCAGTCTTGCATTCTTATCTTCTACACATGTAGGGGATAGACTACACTTGTGAACAAAGAGTGAAGTCAGACAACCATggacaatatttaaatataaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K10299 FBXO16; F-box protein 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2847 lncRNA downstream 655516 13729447 ~ 13732039 (-) False AMCG00003667
TU2833 lncRNA downstream 878625 13507892 ~ 13508930 (-) True G2337
TU2820 lncRNA downstream 972399 13414861 ~ 13415156 (-) True G2324
TU2776 lncRNA downstream 1150562 13233495 ~ 13236993 (-) True G2291
TU2771 lncRNA downstream 1209383 13177460 ~ 13178172 (-) True G2287
TU2957 lncRNA upstream 14332 14409236 ~ 14410253 (-) True G2443
TU2958 lncRNA upstream 20475 14415379 ~ 14415673 (-) True G2444
TU2959 lncRNA upstream 23674 14418578 ~ 14419732 (-) True G2445
TU2961 lncRNA upstream 25827 14420731 ~ 14421315 (-) True G2447
TU3021 lncRNA upstream 304055 14698959 ~ 14699237 (-) True G2494
AMCG00003677 mRNA downstream 33022 14338426 ~ 14354533 (-) True AMCG00003677
AMCG00003667 mRNA downstream 657857 13664743 ~ 13729698 (-) True AMCG00003667
AMCG00003665 mRNA downstream 825358 13545351 ~ 13562197 (-) True AMCG00003665
AMCG00003664 mRNA downstream 872655 13509791 ~ 13514900 (-) True AMCG00003664
AMCG00003663 mRNA downstream 988708 13387807 ~ 13398847 (-) True AMCG00003663
AMCG00003686 mRNA upstream 31381 14426285 ~ 14461583 (-) True AMCG00003686
AMCG00003684 mRNA upstream 82020 14476924 ~ 14483379 (-) True AMCG00003684
AMCG00003687 mRNA upstream 133737 14528641 ~ 14531680 (-) True AMCG00003687
AMCG00003689 mRNA upstream 222559 14617463 ~ 14644456 (-) True AMCG00003689
AMCG00003692 mRNA upstream 611513 15006417 ~ 15016678 (-) True AMCG00003692
TU2876 other downstream 374534 14009458 ~ 14013021 (-) True G2373
TU2747 other downstream 1276427 13104356 ~ 13111128 (-) False AMCG00003652
TU2704 other downstream 1352066 13034953 ~ 13035489 (-) True G2236
TU2508 other downstream 2309403 12076038 ~ 12078152 (-) False AMCG00003625
TU2480 other downstream 2447772 11923808 ~ 11939783 (-) True AMCG00003623
TU3027 other upstream 415882 14810786 ~ 14811331 (-) True G2500
TU3242 other upstream 1120769 15515673 ~ 15591730 (-) True G2665
TU3879 other upstream 3547673 17942577 ~ 17944942 (-) True G3181
TU3909 other upstream 3751756 18146660 ~ 18152381 (-) True AMCG00003782
TU4265 other upstream 5030059 19424963 ~ 19425366 (-) True G3517

Expression Profile